NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21409.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21409.1 Public Mus musculus 7 Saxo2 23 108 98 CCDS HistoryNCBI Gene:330577Re-query CCDS DB by CCDS ID:21409.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21409.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056728.4 ENSMUSP00000057993.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056728.4Link to Ensembl Protein Viewer:ENSMUSP00000057993.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000056728Re-query CCDS DB by Protein ID:ENSMUSP00000057993
Original member NCBI NM_177894.4 NP_808562.3 Updated not alive Link to Nucleotide Sequence:NM_177894.4Link to Protein Sequence:NP_808562.3Re-query CCDS DB by Nucleotide ID:NM_177894Re-query CCDS DB by Protein ID:NP_808562
Current member NCBI NM_177894.5 NP_808562.3 Accepted alive Link to Nucleotide Sequence:NM_177894.5Link to Protein Sequence:NP_808562.3Re-query CCDS DB by Nucleotide ID:NM_177894Re-query CCDS DB by Protein ID:NP_808562Link to BLAST:NP_808562.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808562.3 394 Q8BQB6 394 100% 0 0

Chromosomal Locations for CCDS 21409.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 82634464 82635407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82643647 82643849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 82648392 82648429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGAGGAACTGGTGTCTGTGCCAGATTTGCACCTGCGGGTCAGATTATCGCCCTTATGAAATAGTCAAGC
AGCCTCGCCACATACCTGAAGAATATAAACCCAAACAGGGGAAAATTGATCTTGGTACTACCTACAAGCG
AGATTTTAATCCTTACAAAGTACAGCCTTTGATAAAAGTCCGGCCTGTGGAAAGACAACAAGTTAAAAAA
GGAAAGTTGGACACTGTCCCAACTTATAAAGATGATTATAGATCTTGGGATATTCAGAAATGTGAACTGT
GTAAACCAGAGCAAGCTTACCATCCCCCAGATGTGAAATTCGGAAACTCAACTACATTTCAGGATGACTA
TGTTCCCCAGGAGATAAAGCCTAGGCAAAGCTTTAAGCCCTGCTCTGTGGTCAAGTGTTCTGTAGGCCCT
TTTAATGGTGATACAAGTCATCGTCGAGATTATGTACCTCATCAGCTAGAAGTCAAGTTTGCAAGGCCAA
AAGAAATTTATAAGCCTACTGACCAGCCTTTTGAGGATCTCACCACTCACCGGAATGACTTTCAGGGTCT
TGCTGGTGAAACTGCAAAAATCTGCAGACCTGCCTATACCAGAGTGACCCAAAACATTCAGTTTAAAGGA
AGTACTGAATTCCGTGACAGTTTCCAACCATGGGAAATCCCACCACCCAAAGTCAAGAAAGTGGCAGAGT
ATGTACCTCCTTCAGGAAGCATGCAGTTAAACAGCACCAGCCACCTCGACTATGTTCCCTATCAGGCCAG
CCGCGTAGTTGCCATTAGACCAGTTTCTCACAGAAGGCAAAGCAATTTTCCTTTCCAAGGAAAAAGCACC
ACGAAGGAAGATTTTCCAGCATGGGAAATTTGTCGCCAAGGACTTATTAAGCAGCAGCAACAAATTCCCA
ACCCATCTGGAAAATTTGAGGGTTTGAGCACTTTCAGATCTCACTTTGTGCCACATGAATTGATTCCAAC
AGAGAGCTGCAAACCTTTAAATGAAGCTCTTAAGAGTTCAGTTCCACTTGATGATGTCACCATGTATTCT
ATACAGTTCACACCGAAGAAACAGGAAATCTGCCCAGCTAGCTATCCTTCTCCTCCTGGTTATATATTTG
AAAATACAAATTCCCAAGGACATAAATTCTTTCGCAAGATTATTCCTGCAGTGAAGGCCTTTTAG

Translation (394 aa):
MRNWCLCQICTCGSDYRPYEIVKQPRHIPEEYKPKQGKIDLGTTYKRDFNPYKVQPLIKVRPVERQQVKK
GKLDTVPTYKDDYRSWDIQKCELCKPEQAYHPPDVKFGNSTTFQDDYVPQEIKPRQSFKPCSVVKCSVGP
FNGDTSHRRDYVPHQLEVKFARPKEIYKPTDQPFEDLTTHRNDFQGLAGETAKICRPAYTRVTQNIQFKG
STEFRDSFQPWEIPPPKVKKVAEYVPPSGSMQLNSTSHLDYVPYQASRVVAIRPVSHRRQSNFPFQGKST
TKEDFPAWEICRQGLIKQQQQIPNPSGKFEGLSTFRSHFVPHELIPTESCKPLNEALKSSVPLDDVTMYS
IQFTPKKQEICPASYPSPPGYIFENTNSQGHKFFRKIIPAVKAF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH