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Report for CCDS53189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53189.1 Reviewed, update pending Mus musculus X Pramel3e 23 108 98 CCDS HistoryNCBI Gene:331531Re-query CCDS DB by CCDS ID:53189.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 53189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068340.2 ENSMUSP00000068753.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068340.2Link to Ensembl Protein Viewer:ENSMUSP00000068753.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000068340Re-query CCDS DB by Protein ID:ENSMUSP00000068753
Original member NCBI NM_177918.1 NP_808586.1 Updated not alive Link to Nucleotide Sequence:NM_177918.1Link to Protein Sequence:NP_808586.1Re-query CCDS DB by Nucleotide ID:NM_177918Re-query CCDS DB by Protein ID:NP_808586
Current member NCBI NM_177918.2 NP_808586.2 Pending alive Link to Nucleotide Sequence:NM_177918.2Link to Protein Sequence:NP_808586.2Re-query CCDS DB by Nucleotide ID:NM_177918Re-query CCDS DB by Protein ID:NP_808586Link to BLAST:NP_808586.2

Chromosomal Locations for CCDS 53189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 135495032 135495036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135499268 135499567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135500871 135501455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 135502033 135502546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGTGGTTCATTATGATGGACACCAAGGACCCGCCCACACTATTGGATCTTGCTACACAGAATCTATTGA
GTAATGAGCATGCAGCAATCCAAGCCCTGGAGGAGATCCCAAGGGAGCTTTTTGTCCCTTTGTTCACTGC
TGCCTTCACGGGTAGACACAAGAATATACTGACAGCAATTGTGAAGGCTTGGCCTTTTGCCTGTCTCCAC
ATTGGGGCATTAAGTGTGCAGGAACCTGAGCGTGAACTCCTGAAAGCCTTGATTGAGAGTCTTCAGTTCC
TCCTTGCCCTGAACTCAGCTACTAGGAGCCCTAAACTGAGGATCCTAGATTTAAGGCAGGATGCTGGCTG
CAAGACCGTATGTCCTGAGATCAGTACTAATTCGACAATTTGCTTTCGTTCTTGTGCTCACTCTGAGCAC
TCTATCTTCAAAATTGAAGGCCAGGAGAGTCTTTCAAGTTCCAAGTCTGAAGCTCAGCCCTCTAGGCTGC
CTATGGAATTGATAGTGGACATTTCCCTTGATGGCACTTTGAGGGAAAGGAATTTTTTTGCTTTGCTTCA
GAATAAAGTAGAGCAGAGCCTAGGCTCTCTGCACCTGTGCTGCAGAGATTTGCAAATTAATAACTTGTGT
GAATGCAGACATGCATTAAGCCATCTGGATCTGAAATGTGTTGATCACCTTGCAGTTGATGAGTCTCCTC
TTACTGAAGTTACCAAACTTTTATCTCATACAATACAGCTGGACAGTCTTAGCCTGTCTAAAATCGCTTG
TAGATCTTTGAATGGGAGAACCTTTAGAAATTTTATCACCCAACTGAGTCGTATGAACCACCTGAAGGAG
CTCAGCTTGTCTTCATTCTGCCTCACAGATCATCTTGAAAATGTCCTGAGAGTACTATCTGCTGATTTGG
AGTTCTTATATCTGCCGTTCTGTGGACTTTCTTACAGTGACTTCAAGTTTCTCTCTGAGTGCTCTCAAGT
CAGTCATTTAAAGTTGCTGAATGTCAACAACAATCCAATATATTGGGAAGATTGTGAGCCATTTTATTAT
CTCCTGCAGAATGTTTCTAGCACCTTGCAGCATCTGAAAATTTGTTATTGCTTTTTAACAGATTCTACAA
TCTCTGTTCTTATCCCAGCCCTAACCCGGTGTTCTCAACTTCGAGTGCTTCACTTTTATTCAAATCAAAT
TACCATGGGCATGCTTATGAGAATTCTTGAGCTATTAACTCCATTGAAGGAGCTTAAACATGTGATCTAT
CCCATCCCTGTCCATTGCTATGGGAGGTGGCATTTTCAAGGCAGTTTAGATAGACAGAAGGTTGAAGATG
TGCAGAGACAATTGAACTTAATGCTACAGGAGGCAGAAAGGAGTGATATGAATTGGATCACTTACTCTGA
TTAA

Translation (467 aa):
MWFIMMDTKDPPTLLDLATQNLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLH
IGALSVQEPERELLKALIESLQFLLALNSATRSPKLRILDLRQDAGCKTVCPEISTNSTICFRSCAHSEH
SIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLC
ECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKE
LSLSSFCLTDHLENVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYY
LLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIY
PIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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