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Report for CCDS56268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56268.1 Public Homo sapiens 3 PLA1A 24 110 108 CCDS HistoryNCBI Gene:51365Re-query CCDS DB by CCDS ID:56268.1Re-query CCDS DB by GeneID:51365See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56268.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000495992.5 ENSP00000417326.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000495992.5Link to Ensembl Protein Viewer:ENSP00000417326.1Re-query CCDS DB by Nucleotide ID:ENST00000495992Re-query CCDS DB by Protein ID:ENSP00000417326
Original member Current member NCBI NM_001206960.2 NP_001193889.1 Accepted alive Link to Nucleotide Sequence:NM_001206960.2Link to Protein Sequence:NP_001193889.1Re-query CCDS DB by Nucleotide ID:NM_001206960Re-query CCDS DB by Protein ID:NP_001193889Link to BLAST:NP_001193889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193889.1 440 Q53H76-3 440 100% 0 0

Chromosomal Locations for CCDS 56268.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 119597914 119597986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119606774 119606975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119608770 119608899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119609468 119609576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119613017 119613118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119616012 119616101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119618019 119618186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119619563 119619652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119625124 119625232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119628701 119628865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119629384 119629468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1323 nt):
ATGCCCCCAGGTCCCTGGGAGAGCTGCTTCTGGGTGGGGGGCCTCATTTTGTGGCTCAGCGTTGGAAGTT
CAGGGGATGCACCTCCTACCCCACAGCCAAAGTGCGCTGACTTCCAGAGCGCCAACCTTTTTGAAGGCAC
CGATCTCAAAGTCCAGTTTCTCCTCTTTGTCCCTTCGAATCCTAGCTGTGGGCAGCTAGTAGAAGGAAGC
AGTGACCTCCAAAACTCTGGGTTCAATGCCACTCTGGGAACCAAACTAATTATCCATGGATTCAGGGTTT
TAGGAACAAAGCCTTCCTGGATTGACACATTTATTAGAACCCTTCTGCGTGCAACGAATGCTAATGTGAT
TGCCGTGGACTGGATTTATGGGTCTACAGGAGTCTACTTCTCAGCTGTGAAAAATGTGCTGGGTGTGTCG
GAATCCTCAATCCACATCATTGGTGTTAGCCTGGGGGCCCACGTTGGGGGCATGGTGGGACAGCTCTTCG
GAGGCCAGCTGGGACAGATCACAGGCCTGGACCCCGCTGGACCTGAGTACACCAGGGCCAGTGTGGAAGA
GCGCTTGGATGCTGGAGATGCCCTCTTCGTGGAAGCCATCCACACAGACACCGACAATTTGGGTATTCGG
ATTCCCGTTGGACATGTGGACTACTTCGTCAACGGAGGCCAAGACCAACCTGGCTGCCCCACCTTCTTTT
ACGCAGGTTATAGTTATCTGATCTGTGATCACATGAGGGCTGTGCACCTCTACATCAGCGCCCTGGAGAA
TTCCTGTCCACTGATGGCCTTTCCCTGTGCCAGCTACAAGGCCTTCCTTGCTGGACGCTGTCTGGATTGC
TTTAACCCTTTTCTGCTTTCCTGCCCAAGGATAGGACTGGTGGAACAAGGTGGTGTCAAGATAGAGCCGC
TCCCCAAGGAAGTGAAAGTCTACCTCCTGACTACTTCCAGTGCTCCGTACTGCATGCATCACAGCCTCGT
GGAGTTTCACTTGAAGGAACTGAGAAACAAGGACACCAACATCGAGGTTACCTTCCTTAGCAGTAACATC
ACCTCTTCATCTAAGATCACCATACCTAAGCAGCAACGCTATGGGAAAGGAATCATAGCCCATGCCACCC
CACAATGCCAGATAAACCAAGTGAAATTCAAGTTTCAGTCTTCCAACCGAGTTTGGAAAAAAGACCGGAC
TACCATTATTGGGAAGTTCTGCACTGCCCTTTTGCCTGTCAATGACAGAGAAAAGATGGTCTGCTTACCT
GAACCAGTGAACTTACAAGCAAGTGTGACTGTTTCCTGTGACCTGAAGATAGCCTGTGTGTAG

Translation (440 aa):
MPPGPWESCFWVGGLILWLSVGSSGDAPPTPQPKCADFQSANLFEGTDLKVQFLLFVPSNPSCGQLVEGS
SDLQNSGFNATLGTKLIIHGFRVLGTKPSWIDTFIRTLLRATNANVIAVDWIYGSTGVYFSAVKNVLGVS
ESSIHIIGVSLGAHVGGMVGQLFGGQLGQITGLDPAGPEYTRASVEERLDAGDALFVEAIHTDTDNLGIR
IPVGHVDYFVNGGQDQPGCPTFFYAGYSYLICDHMRAVHLYISALENSCPLMAFPCASYKAFLAGRCLDC
FNPFLLSCPRIGLVEQGGVKIEPLPKEVKVYLLTTSSAPYCMHHSLVEFHLKELRNKDTNIEVTFLSSNI
TSSSKITIPKQQRYGKGIIAHATPQCQINQVKFKFQSSNRVWKKDRTTIIGKFCTALLPVNDREKMVCLP
EPVNLQASVTVSCDLKIACV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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