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Report for CCDS44689.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44689.1 Public Homo sapiens 11 PCF11 24 110 108 CCDS HistoryNCBI Gene:51585Re-query CCDS DB by CCDS ID:44689.1Re-query CCDS DB by GeneID:51585See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44689.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298281.8 ENSP00000298281.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000298281.8Link to Ensembl Protein Viewer:ENSP00000298281.4Re-query CCDS DB by Nucleotide ID:ENST00000298281Re-query CCDS DB by Protein ID:ENSP00000298281
Original member Current member NCBI NM_015885.4 NP_056969.2 Accepted alive Link to Nucleotide Sequence:NM_015885.4Link to Protein Sequence:NP_056969.2Re-query CCDS DB by Nucleotide ID:NM_015885Re-query CCDS DB by Protein ID:NP_056969Link to BLAST:NP_056969.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056969.2 1555 O94913 1555 100% 0 0

Chromosomal Locations for CCDS 44689.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83157440 83157631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83161327 83161452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83163679 83163867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83164207 83164401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83165600 83166714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83167125 83167308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83167415 83167505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83168428 83169995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83171818 83171914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83177085 83177204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83177714 83177819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83181008 83181191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83181854 83182009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83182399 83182491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83183038 83183073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83184679 83184894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4668 nt):
ATGTCAGAGCAGACGCCGGCCGAGGCCGGTGCTGCGGGGGCCCGGGAGGACGCCTGTCGGGATTATCAGT
CATCGCTCGAAGACCTGACCTTCAATAGCAAGCCGCACATCAATATGCTGACCATTCTAGCCGAGGAGAA
CCTGCCCTTCGCCAAGGAGATCGTCTCTCTCATCGAGGCCCAAACCGCCAAGGCTCCTTCCTCAGAGAAG
CTTCCTGTTATGTACCTTATGGATTCTATTGTGAAAAACGTTGGAAGAGAGTATCTCACTGCCTTTACTA
AAAATCTAGTTGCAACATTTATTTGTGTGTTTGAAAAGGTGGATGAAAATACTAGGAAAAGTTTATTTAA
GTTACGTTCTACATGGGATGAAATATTCCCTTTGAAGAAACTTTATGCCCTGGATGTCAGAGTCAATTCA
TTAGATCCTGCTTGGCCTATTAAACCTCTACCCCCCAATGTGAATACGTCTAGCATCCATGTGAATCCTA
AATTTTTAAATAAATCGCCCGAGGAGCCTTCAACACCTGGTACAGTGGTCAGTTCCCCTAGCATCTCCAC
TCCTCCAATTGTTCCTGATATACAAAAGAATCTTACACAAGAACAACTAATAAGGCAGCAGTTACTGGCA
AAGCAAAAACAGTTGTTAGAACTTCAGCAGAAAAAGCTGGAGCTTGAGCTAGAGCAAGCTAAGGCACAGT
TGGCAGTTTCTCTTAGTGTTCAGCAGGAAACATCCAATTTAGGTCCTGGATCTGCACCATCCAAATTACA
TGTTTCACAGATTCCCCCTATGGCAGTTAAAGCTCCTCATCAGGTTCCTGTGCAATCTGAGAAAAGCCGT
CCAGGACCATCCTTACAAATTCAGGATTTAAAAGGAACTAACCGGGATCCTCGTCTGAACAGGATAAGCC
AACATTCTCATGGAAAAGATCAGAGTCACAGGAAAGAATTTCTAATGAACACATTAAACCAGTCTGATAC
TAAGACAAGTAAAACTATACCCTCTGAAAAACTAAATTCATCCAAGCAAGAAAAAAGTAAATCAGGTGAA
AAAATAACCAAGAAAGAACTTGACCAATTAGATTCTAAATCGAAATCGAAATCGAAATCACCCTCACCTT
TGAAAAACAAATTATCTCACACAAAAGACTTGAAAAATCAAGAATCGGAAAGTATGAGGTTGTCTGATAT
GAACAAGAGAGATCCAAGATTAAAAAAACATCTTCAGGATAAGACCGATGGCAAAGATGATGATGTGAAA
GAGAAGAGAAAAACTGCAGAAAAAAAGGATAAAGATGAGCACATGAAGTCATCCGAACACAGACTGGCTG
GAAGTAGAAATAAAATCATAAATGGCATTGTACAAAAACAGGATACAATAACAGAAGAGTCAGAAAAACA
GGGGACAAAACCAGGGAGATCGAGTACTAGAAAGCGATCAAGATCTCGATCACCCAAGTCTAGGTCACCA
ATTATACATTCCCCAAAGAGAAGAGATAGGCGGTCACCCAAACGAAGGCAAAGAAGTATGTCTCCAACAT
CGACACCTAAAGCTGGAAAGATTCGCCAATCTGGAGCTAAGCAGTCACATATGGAAGAGTTTACACCACC
TTCTAGGGAAGACAGAAATGCTAAGAGAAGTACTAAACAGGATATTCGGGATCCAAGGCGAATGAAAAAG
ACTGAAGAGGAGCGACCACAAGAAACTACAAATCAGCATTCTACAAAGTCAGGCACTGAACCAAAGGAGA
ATGTAGAAAACTGGCAAAGTTCCAAGTCTGCCAAAAGATGGAAATCTGGTTGGGAAGAAAATAAAAGCTT
ACAACAGGTTGATGAACATAGTAAACCTCCTCATCTGAGGCATAGGGAGAGCTGGTCAAGCACTAAAGGA
ATTTTATCACCTCGAGCCCCAAAGCAGCAACAGCATCGATTAAGTGTAGATGCCAATCTTCAGATTCCTA
AAGAGTTAACTCTTGCAAGCAAAAGAGAATTACTTCAAAAGACGAGTGAACGTTTAGCATCTGGTGAAAT
TACACAGGATGACTTCCTTGTTGTTGTGCATCAAATTCGACAGCTATTTCAGTATCAAGAAGGTGTGCGA
GAAGAGCAGAGATCTCCATTCAATGATCGTTTTCCACTTAAGCGACCTCGATATGAAGATTCAGATAAAC
CATTTGTAGATAGTCCAGCATCAAGATTCGCCGGCCTGGATACAAATCAGCGACTTACAGCTTTAGCTGA
AGACAGACCGTTATTTGATGGACCTAGTAGGCCATCAGTAGCAAGAGATGGCCCAACGAAGATGATTTTT
GAAGGACCCAATAAATTAAGCCCTCGAATTGATGGACCTCCCACACCAGCTTCTCTTCGGTTTGATGGGT
CACCAGGACAAATGGGGGGAGGAGGCCCTTTGAGATTTGAGGGGCCACAAGGTCAGCTAGGAGGTGGGTG
TCCTTTGAGATTTGAAGGTCCTCCAGGACCAGTGGGGACACCTCTGCGGTTTGAGGGCCCAATTGGTCAA
GCAGGAGGAGGTGGTTTTCGGTTTGAAGGTTCCCCTGGTCTGAGGTTTGAGGGATCTCCAGGTGGTTTGA
GATTTGAGGGACCAGGAGGCCAGCCTGTGGGTGGTCTGAGGTTTGAGGGACATCGTGGTCAACCTGTGGG
TGGTCTAAGGTTTGAGGGACCTCATGGTCAGCCTGTGGGTGGACTTAGATTTGATAATCCCCGAGGTCAG
CCTGTAGGTGGACTTAGATTTGAGGGGGGTCATGGTCCATCAGGGGCTGCGATTAGGTTTGATGGACCTC
ATGGTCAGCCAGGAGGTGGAATCAGATTTGAGGGCCCTTTGCTACAGCAAGGGGTTGGAATGAGGTTTGA
GGGCCCCCATGGTCAGTCAGTAGCTGGTCTGAGATTTGAGGGACAACATAATCAACTTGGTGGGAACCTT
AGGTTTGAGGGTCCACATGGTCAGCCAGGGGTTGGTATCAGGTTTGAAGGCCCTTTAGTCCAACAAGGAG
GTGGAATGAGGTTTGAGGGTCCTTCTGTACCAGGAGGTGGCCTGAGAATTGAAGGGCCTCTGGGTCAAGG
TGGTCCAAGATTTGAAGGTTGTCATGCTTTAAGGTTTGATGGGCAGCCAGGTCAGCCGTCACTCTTGCCA
AGATTTGATGGATTACATGGTCAGCCAGGTCCTAGATTTGAAAGGACTCCTGGTCAGCCAGGCCCTCAGA
GGTTTGATGGACCACCTGGACAGCAGGTTCAACCCAGATTTGACGGTGTACCTCAAAGATTTGATGGTCC
ACAACATCAGCAAGCATCAAGGTTTGATATTCCTCTTGGTCTTCAAGGCACAAGATTTGACAATCATCCT
TCACAAAGGCTTGAATCAGTATCTTTCAATCAGACTGGTCCATATAATGATCCACCTGGCAATGCTTTTA
ATGCCCCATCCCAAGGACTACAGTTCCAAAGACATGAACAAATATTTGATTCACCTCAAGGACCAAATTT
TAATGGACCACATGGCCCTGGAAACCAGAGTTTCTCTAATCCACTTAACAGAGCTTCTGGACACTATTTT
GATGAAAAAAATCTTCAGAGTTCTCAATTTGGAAACTTTGGCAATATACCTGCTCCAATGACAGTAGGAA
ATATTCAGGCATCTCAACAGGTTCTGAGTGGTGTTGCTCAGCCAGTAGCTTTTGGTCAAGGACAACAGTT
TTTACCAGTTCATCCACAAAATCCTGGATTTGTTCAGAATCCTTCAGGAGCCCTCCCTAAGGCATATCCT
GATAATCATCTCAGTCAGGTGGATGTAAATGAATTGTTTTCAAAATTGCTAAAAACAGGAATTCTCAAAT
TGTCCCAAACTGATTCAGCTACAACACAAGTAAGTGAAGTAACTGCTCAGCCTCCCCCTGAAGAGGAGGA
AGATCAAAATGAAGATCAAGATGTTCCAGATCTTACTAATTTTACAGTTGAAGAATTGAAACAACGTTAT
GACAGTGTTATAAATCGACTGTACACTGGTATTCAGTGTTACTCTTGTGGAATGAGGTTTACAACATCAC
AGACAGATGTTTATGCAGATCATTTGGACTGGCATTATCGGCAAAATAGAACTGAAAAGGATGTTAGCCG
AAAAGTCACTCATAGACGTTGGTACTACAGTTTAACAGACTGGATAGAATTTGAGGAGATAGCTGATCTG
GAAGAACGGGCAAAGAGCCAGTTTTTTGAAAAGGTGCATGAAGAAGTTGTGCTCAAAACTCAAGAGGCTG
CTAAAGAAAAAGAGTTCCAAAGTGTACCTGCTGGACCAGCTGGAGCAGTTGAGAGTTGTGAAATCTGTCA
AGAACAATTTGAACAATACTGGGATGAAGAAGAGGAGGAATGGCATTTGAAAAATGCTATTAGAGTAGAT
GGAAAGATTTATCATCCATCATGTTATGAAGATTATCAAAATACATCTTCATTTGATTGTACACCATCTC
CCAGCAAGACACCAGTTGAAAACCCCTTGAATATTATGTTGAACATTGTCAAAAACGAATTGCAGGAACC
CTGTGACAGTCCCAAAGTTAAGGAAGAACGAATTGATACACCACCAGCTTGTACAGAGGAAAGCATAGCA
ACACCCTCTGAAATTAAAACAGAAAATGACACAGTCGAGTCAGTTTAA

Translation (1555 aa):
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEK
LPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNS
LDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEEPSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLA
KQKQLLELQQKKLELELEQAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQSEKSR
PGPSLQIQDLKGTNRDPRLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIPSEKLNSSKQEKSKSGE
KITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMNKRDPRLKKHLQDKTDGKDDDVK
EKRKTAEKKDKDEHMKSSEHRLAGSRNKIINGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSP
IIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKK
TEEERPQETTNQHSTKSGTEPKENVENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRESWSSTKG
ILSPRAPKQQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDDFLVVVHQIRQLFQYQEGVR
EEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVARDGPTKMIF
EGPNKLSPRIDGPPTPASLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQ
AGGGGFRFEGSPGLRFEGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQ
PVGGLRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNL
RFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLP
RFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHP
SQRLESVSFNQTGPYNDPPGNAFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYF
DEKNLQSSQFGNFGNIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYP
DNHLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTNFTVEELKQRY
DSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADL
EERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVD
GKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIA
TPSEIKTENDTVESV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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