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Report for CCDS21309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21309.1 Public Mus musculus 7 Nell1 23 108 98 CCDS HistoryNCBI Gene:338352Re-query CCDS DB by CCDS ID:21309.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081872.12 ENSMUSP00000080550.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081872.12Link to Ensembl Protein Viewer:ENSMUSP00000080550.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081872Re-query CCDS DB by Protein ID:ENSMUSP00000080550
Original member Current member NCBI NM_001037906.2 NP_001032995.1 Accepted alive Link to Nucleotide Sequence:NM_001037906.2Link to Protein Sequence:NP_001032995.1Re-query CCDS DB by Nucleotide ID:NM_001037906Re-query CCDS DB by Protein ID:NP_001032995Link to BLAST:NP_001032995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032995.1 810 Q2VWQ2 810 100% 0 0

Chromosomal Locations for CCDS 21309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 49975389 49975443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 49982676 49982804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50062618 50062768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50120530 50120700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50176225 50176321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50219582 50219654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50220254 50220336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50228792 50228926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50230156 50230258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50249641 50249714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50258166 50258265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50279518 50279646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50448840 50448965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50560767 50560889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50701156 50701251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50826260 50826400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50848483 50848676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50853829 50854005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50856204 50856428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 50862899 50862949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGCCGATGGATGTGATTTTAGTTTTGTGGTTCTGTGTGTGCACCGCCAGGACAGTGCTGGGCTTTGGGA
TGGACCCTGACCTTCAGATGGACATCATCACTGAACTTGACCTTGTGAACACCACCCTGGGCGTCACTCA
GGTGGCTGGACTACACAATGCCAGTAAGGCATTTCTGTTTCAAGATGTACAGAGAGAGATCCACTCAGCC
CCTCATGTGAGTGAGAAGCTGATCCAGCTATTCCGGAATAAGAGTGAGTTTACCTTTTTGGCTACAGTGC
AGCAGAAGCCGTCCACCTCAGGGGTGATACTGTCGATCCGGGAGCTGGAACACAGCTATTTTGAACTGGA
GAGCAGTGGCCCAAGAGAAGAGATACGCTATCATTACATCCATGGCGGCAAGCCCAGGACTGAGGCCCTT
CCCTACCGCATGGCCGATGGACAGTGGCACAAGGTCGCGCTGTCTGTGAGCGCCTCTCACCTCCTACTCC
ATGTCGACTGCAATAGGATTTATGAGCGTGTGATAGATCCTCCGGAGACCAACCTTCCTCCAGGAAGCAA
TCTATGGCTTGGGCAACGTAATCAAAAGCATGGCTTTTTCAAAGGAATCATCCAAGATGGCAAGATCATC
TTCATGCCGAACGGCTTCATCACACAGTGCCCCAACCTAAATCGCACTTGCCCAACATGCAGTGATTTCC
TGAGCCTGGTTCAAGGAATAATGGATTTGCAAGAGCTTTTGGCCAAGATGACTGCAAAACTGAATTATGC
AGAGACGAGACTTGGTCAACTGGAAAATTGCCACTGTGAGAAGACCTGCCAAGTGAGTGGGCTGCTCTAC
AGGGACCAAGACTCCTGGGTAGATGGTGACAACTGCAGGAACTGCACATGCAAAAGTGGTGCTGTGGAGT
GCCGAAGGATGTCCTGTCCCCCACTCAACTGTTCCCCAGACTCACTTCCTGTGCATATTTCTGGCCAATG
TTGTAAAGTTTGCAGACCAAAATGTATCTATGGAGGAAAAGTTCTTGCTGAGGGCCAGCGGATTTTAACC
AAGACCTGCCGGGAATGTCGAGGTGGAGTCTTGGTAAAAATCACAGAAGCTTGCCCTCCTTTGAACTGCT
CAGAGAAGGATCATATTCTTCCGGAGAACCAGTGCTGCAGGGTCTGCCGAGGTCATAACTTCTGTGCAGA
AGCACCTAAGTGTGGAGAAAACTCGGAATGCAAAAATTGGAATACAAAAGCGACTTGTGAGTGCAAGAAT
GGATACATCTCTGTCCAGGGCAACTCTGCATACTGTGAAGATATCGATGAGTGTGCAGCAAAGATGCACT
ACTGTCATGCCAACACGGTGTGTGTCAACTTGCCGGGGTTATATCGCTGTGACTGCATCCCAGGATACAT
CCGTGTGGATGACTTCTCTTGTACGGAGCATGATGATTGTGGCAGCGGACAACACAACTGTGACAAAAAT
GCCATCTGTACCAACACAGTCCAGGGACACAGCTGTACCTGCCAGCCAGGCTACGTGGGAAATGGTACTG
TCTGCAAAGCATTCTGTGAAGAGGGTTGCAGATACGGAGGTACCTGTGTGGCCCCTAACAAATGTGTCTG
TCCTTCTGGATTCACAGGAAGCCACTGTGAGAAAGATATTGATGAATGTGCAGAGGGATTCGTTGAGTGC
CACAACCACTCCCGCTGCGTTAACCTTCCAGGGTGGTACCACTGTGAGTGCAGAAGCGGTTTCCATGACG
ATGGGACCTATTCACTGTCCGGGGAGTCCTGCATTGATATTGATGAATGTGCCTTAAGAACTCACACTTG
TTGGAATGACTCTGCCTGCATCAACTTAGCAGGAGGATTTGACTGCCTGTGTCCCTCTGGGCCCTCCTGC
TCTGGTGACTGTCCCCACGAAGGGGGGCTGAAGCATAATGGGCAGGTGTGGATTCTGAGAGAAGACAGGT
GTTCAGTCTGTTCCTGTAAGGATGGGAAGATATTCTGCCGGCGGACAGCTTGTGATTGCCAGAATCCAAA
TGTTGACCTTTTCTGCTGCCCAGAGTGTGACACCAGGGTCACTAGCCAATGTTTAGATCAAAGCGGACAG
AAGCTCTATCGAAGTGGAGACAACTGGACCCACAGCTGCCAGCAGTGCCGATGTCTGGAAGGAGAGGCAG
ACTGCTGGCCTCTAGCTTGCCCTAGTTTGAGCTGTGAATACACAGCCATCTTTGAAGGAGAGTGTTGTCC
CCGCTGTGTCAGTGACCCCTGCCTGGCTGATAATATTGCCTATGACATCAGAAAAACTTGCCTGGACAGC
TCTGGTATTTCGAGGCTGAGCGGCGCAGTGTGGACAATGGCTGGATCTCCCTGTACAACCTGTCAATGCA
AGAATGGGAGAGTCTGCTGCTCTGTGGATCTGGTGTGTCTTGAGAATAACTGA

Translation (810 aa):
MPMDVILVLWFCVCTARTVLGFGMDPDLQMDIITELDLVNTTLGVTQVAGLHNASKAFLFQDVQREIHSA
PHVSEKLIQLFRNKSEFTFLATVQQKPSTSGVILSIRELEHSYFELESSGPREEIRYHYIHGGKPRTEAL
PYRMADGQWHKVALSVSASHLLLHVDCNRIYERVIDPPETNLPPGSNLWLGQRNQKHGFFKGIIQDGKII
FMPNGFITQCPNLNRTCPTCSDFLSLVQGIMDLQELLAKMTAKLNYAETRLGQLENCHCEKTCQVSGLLY
RDQDSWVDGDNCRNCTCKSGAVECRRMSCPPLNCSPDSLPVHISGQCCKVCRPKCIYGGKVLAEGQRILT
KTCRECRGGVLVKITEACPPLNCSEKDHILPENQCCRVCRGHNFCAEAPKCGENSECKNWNTKATCECKN
GYISVQGNSAYCEDIDECAAKMHYCHANTVCVNLPGLYRCDCIPGYIRVDDFSCTEHDDCGSGQHNCDKN
AICTNTVQGHSCTCQPGYVGNGTVCKAFCEEGCRYGGTCVAPNKCVCPSGFTGSHCEKDIDECAEGFVEC
HNHSRCVNLPGWYHCECRSGFHDDGTYSLSGESCIDIDECALRTHTCWNDSACINLAGGFDCLCPSGPSC
SGDCPHEGGLKHNGQVWILREDRCSVCSCKDGKIFCRRTACDCQNPNVDLFCCPECDTRVTSQCLDQSGQ
KLYRSGDNWTHSCQQCRCLEGEADCWPLACPSLSCEYTAIFEGECCPRCVSDPCLADNIAYDIRKTCLDS
SGISRLSGAVWTMAGSPCTTCQCKNGRVCCSVDLVCLENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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