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Report for CCDS51753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51753.1 Public Mus musculus 6 Kdm7a 23 108 98 CCDS HistoryNCBI Gene:338523Re-query CCDS DB by CCDS ID:51753.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002305.8 ENSMUSP00000002305.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002305.8Link to Ensembl Protein Viewer:ENSMUSP00000002305.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002305Re-query CCDS DB by Protein ID:ENSMUSP00000002305
Original member NCBI NM_001033430.4 NP_001028602.2 Updated not alive Link to Nucleotide Sequence:NM_001033430.4Link to Protein Sequence:NP_001028602.2Re-query CCDS DB by Nucleotide ID:NM_001033430Re-query CCDS DB by Protein ID:NP_001028602
Current member NCBI NM_001033430.5 NP_001028602.2 Accepted alive Link to Nucleotide Sequence:NM_001033430.5Link to Protein Sequence:NP_001028602.2Re-query CCDS DB by Nucleotide ID:NM_001033430Re-query CCDS DB by Protein ID:NP_001028602Link to BLAST:NP_001028602.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028602.2 940 Q3UWM4 940 100% 0 0

Chromosomal Locations for CCDS 51753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 39143211 39143305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39144292 39144559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39145469 39145554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39146855 39147063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39147188 39147336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39147704 39147801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39148942 39149096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39149287 39149411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39151258 39151467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39152813 39152902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39158214 39158305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39165097 39165203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39166667 39166754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39168941 39169103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39170124 39170310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39170769 39170910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39173278 39173438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39175363 39175480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39181528 39181613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 39206441 39206634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2823 nt):
ATGGCCGGAGCGGCGGCGGCGGTGGCCGCGGGAGCAGCAGCTGGAGCCGCCGCGGCAGCGGGGTCGGTGT
CCGCTCCGGGTCGGGCCTCGGCGCCCCCTCCGCCTCCGCCCGTGTACTGTGTATGCCGGCAGCCGTACGA
CGTGAACCGCTTCATGATCGAGTGCGATGTCTGCAAGGACTGGTTCCACGGCAGCTGTGTTGGCGTGGAA
GAGCATCATGCTGTGGACATTGACCTGTACCACTGCCCGGACTGTGCAGCTCTACACGGCTCTTCCTTAA
TGAAGAAGAGGAGGAACTGGCACAGGCATGACTACACAGAAGTGGATGATGGCTCCAAACCTGTTCAAGC
TGGAACTAGGGCCTTTGTTAAAGAACTACGTTCTCGAGTCTTCCCAAGTGCCGATGAAATCATTGTAAAG
ATGCATGGCAGTCAGCTGACACAAAGATATCTGGAGAAACATGGATTTGATGTCCCTATTATGGTCCCTA
AATTAGATGACCTTGGACTCAGGCTCCCTTCACCTGCTTTTTCAGTGATGGATGTGGAACGTTATGTAGG
TGGTGACAAAGTGATAGATGTTATTGATGTGGCAAGGCAGGCGGACAGCAAAATGACACTTCACAATTAT
GTTAAATACTTCATGAATCCTGACAGACCAAAAGTGCTAAATGTGATCAGCCTTGAATTTTCGGATACAA
AAATGTCTGAATTGGTGGAGGTTCCTGATATAGCCAGAAAACTTTCATGGGTGGAAAATTACTGGCCAGA
TGATTCAGTCTTCCCCAAGCCCTTTGTCCAGAAATACTGCTTAATGGGAGTTCAAGATAGCTATACAGAT
TTCCACATTGACTTTGGTGGGACTTCAGTCTGGTACCATGTCCTTTGGGGTGAGAAGATTTTTTATTTGA
TAAAGCCAACAAATGAAAATTTGGCACTCTATGAATCTTGGAGTTCATCTGTGACCCAGAGTGAGGTGTT
CTTTGGAGATAAAGTAGATAAATGCTACAAATGTGTGGTAAAGCAGGGACATACTTTGTTTGTTCCTACA
GGGTGGATCCATGCTGTGCTCACTTCTCAGGACTGTATGGCTTTTGGAGGGAACTTTCTGCACAACCTCA
ACATTGGCATGCAGCTCAGGTGTTATGAGATGGAAAAAAGACTAAAAACACCAGATCTTTTCAAATTTCC
TTTCTTTGAAGCCATATGCTGGTTTGTAGCCAAAAGTTTGCTGGAAACCTTGAAAGAACTGAAAGAAGAT
GGTTTCCAGCCTCAAAGTTACTTAGTACAGGGAGTAAAAGCACTGCATACTGCTTTAAAATTATGGATGA
AAAAAGAACTTGTATCTGAACATGCCTTTGAGATTCCAGACAATGTTAGACCTGGGCATCTTATTAAGGA
ACTTTCTAAAGTAATTCGAGCAATAGAGGAGGAAAATGGCAAACCAGTTAAATCTCAGGGAATTCCTTCT
GTGTGTCCAGTTTCACGGCCTTCAAATGAGGCATCTCCACCATATCATTCCCGGAGAAAGATGAGGAAAC
TTCGAGATCATAATGTCCGAACTCCTTCTAACCTTGACATTCTTGAGCTCCATACAAGGGAAGTCCTCAA
AAGATTAGAGATGTGTCCATGGGAGGAGGACCTACTGAGCTCTAAACTGAATGGAAAATTCAACAAACAT
CTCCAGCCATCTTCCACAGTACCTGAGTGGAGAGCGAAAGATAATGATCTACGATTACTGCTGACAAATG
GAAGAATAATTAAAGATGAGAGACAGCTGTTTGCAGATCGAAGTCTTTATACAGCAGATAGTGAAAATGA
AGAGGACAAGAAGCCAACACAGAATGCAAACATGAAGACAGAACAGAGCTCAGGAAGAGAGGAGGCCGAA
AGTCAAGGCTCTCCCAAACCACTCAACAGAATCTTTACAAGTGTGAGATCGGAACTCAGGAGTAGACCGT
CAGAATATTCTGATGGTTCTGATTCAGAAGACTCTGGACCCGACTGCACTGCACTGAAAATTAACTTTGC
CACTGAAGATTCTGAAAGTTCAGGTGATGAAAAGAAACATGAAATAACATCACACTTTAAAGAAGAGTCT
GATATAGTGAGGAACCTCCTTCAGAAGAGCCAGAAGCCATCTAGACAGGAAATCCCAGTTAAAAGGGAAT
GTCCTACCTCGACGAGCACAGAGGAAGAAGCTATTCAGGGCATGCTGTCCATGGCAGGGTTGCACTATTC
CTCGTGTTTACAAAGGCAGATACAAAGCACAGATTGCAGTGGTGAGAAGAACTCTCTCCAGGATCCCAGC
AGCTGCCACGGCAGTAACCCTGAGTTTAGGCAGTTGTATCGCTGCAATAAACCAGTGGAATTTGGATACC
ATGCCAAGACTGAAGATCAGGATTTGATGACTTCTTCCTGGAATAAACAGTTTGATCGAACTTCCAGATT
TAATGCTCAGGACTTAAGTAGAAGCCAGAAACACATCAAAAAGGAAAGCTCTTCAGAAATCAATCAGAAG
GCACAAAGCAGGCATTGTGTGGACAGCAATAGCTCAAGCATTCAGAATGGAAAGTACACGCTGAATCCCA
GCTTGGTTTCATGCCAGATAAGTAATGGCAGCCTGAGCCCAGAAAGGCCTATTGGTGAAACTTCTTTTTC
AATGCCCCTTCACCCCACCAAGAGACCTGCATCAAACCCACCACCTATCAGCAACCAGGCAACAAAAGGT
AAACGTCCAAAAAAAGGAATGGCAACAGCCAAACAACGTCTTGGGAAGATTCTGAAATTGAACAGAAATG
GCCATGCTCGCTTCTTCGTGTGA

Translation (940 aa):
MAGAAAAVAAGAAAGAAAAAGSVSAPGRASAPPPPPPVYCVCRQPYDVNRFMIECDVCKDWFHGSCVGVE
EHHAVDIDLYHCPDCAALHGSSLMKKRRNWHRHDYTEVDDGSKPVQAGTRAFVKELRSRVFPSADEIIVK
MHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPAFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNY
VKYFMNPDRPKVLNVISLEFSDTKMSELVEVPDIARKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTD
FHIDFGGTSVWYHVLWGEKIFYLIKPTNENLALYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPT
GWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKSLLETLKELKED
GFQPQSYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEENGKPVKSQGIPS
VCPVSRPSNEASPPYHSRRKMRKLRDHNVRTPSNLDILELHTREVLKRLEMCPWEEDLLSSKLNGKFNKH
LQPSSTVPEWRAKDNDLRLLLTNGRIIKDERQLFADRSLYTADSENEEDKKPTQNANMKTEQSSGREEAE
SQGSPKPLNRIFTSVRSELRSRPSEYSDGSDSEDSGPDCTALKINFATEDSESSGDEKKHEITSHFKEES
DIVRNLLQKSQKPSRQEIPVKRECPTSTSTEEEAIQGMLSMAGLHYSSCLQRQIQSTDCSGEKNSLQDPS
SCHGSNPEFRQLYRCNKPVEFGYHAKTEDQDLMTSSWNKQFDRTSRFNAQDLSRSQKHIKKESSSEINQK
AQSRHCVDSNSSSIQNGKYTLNPSLVSCQISNGSLSPERPIGETSFSMPLHPTKRPASNPPPISNQATKG
KRPKKGMATAKQRLGKILKLNRNGHARFFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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