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Report for CCDS44529.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44529.1 Public Homo sapiens 11 OR52L1 24 110 108 CCDS HistoryNCBI Gene:338751Re-query CCDS DB by CCDS ID:44529.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44529.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332249.4 ENSP00000330338.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332249.4Link to Ensembl Protein Viewer:ENSP00000330338.4Re-query CCDS DB by Nucleotide ID:ENST00000332249Re-query CCDS DB by Protein ID:ENSP00000330338
Original member Current member NCBI NM_001005173.3 NP_001005173.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005173.3Link to Protein Sequence:NP_001005173.3Re-query CCDS DB by Nucleotide ID:NM_001005173Re-query CCDS DB by Protein ID:NP_001005173Link to BLAST:NP_001005173.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005173.3 329 Q8NGH7 329 100% 0 0

Chromosomal Locations for CCDS 44529.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5985941 5986930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGACTTTGGTTTCTTTTTTCTCTTTCCTCTCCAAGCCATTGATAATGCTCCTTAGCAATTCAAGCTGGA
GGCTATCCCAGCCTTCTTTTCTCCTGGTAGGGATTCCAGGTTTAGAGGAAAGCCAGCACTGGATTGCACT
GCCCCTGGGCATCCTTTACCTCCTTGCTTTAGTGGGCAATGTTACCATTCTCTTCATCATCTGGATGGAC
CCATCCTTGCACCAATCTATGTACCTCTTCCTGTCCATGCTAGCTGCCATCGACCTGGTTCTGGCCTCCT
CCACTGCACCCAAAGCCCTTGCAGTGCTCCTGGTTCATGCCCACGAGATTGGGTACATCGTCTGCCTGAT
CCAGATGTTCTTCATCCATGCATTCTCCTCCATGGAGTCAGGGGTACTTGTGGCCATGGCTCTGGATCGC
TATGTAGCCATTTGTCACCCCTTGCACCATTCCACAATCCTGCATCCAGGGGTCATAGGGCGCATCGGAA
TGGTGGTGCTGGTGAGGGGATTACTACTCCTTATCCCCTTCCCCATTTTGTTGGGAACACTTATCTTCTG
CCAAGCCACCATCATAGGCCATGCCTATTGTGAACATATGGCTGTTGTGAAACTTGCCTGCTCAGAAACC
ACAGTCAATCGAGCTTATGGGCTGACTATGGCCTTGCTTGTGATTGGGCTGGATGTTCTGGCCATTGGTG
TTTCCTATGCCCACATCCTCCAGGCAGTGCTGAAGGTACCAGGGAGTGAGGCCCGACTTAAGGCGTTTAG
CACATGTGGCTCTCATATTTGTGTCATCCTGGTCTTCTATGTCCCTGGAATTTTCTCCTTCCTCACTCAC
CGCTTTGGTCATCATGTACCCCATCATGTCCATGTTCTTCTGGCCACACGGTATCTCCTCATGCCACCTG
CGCTCAATCCTCTTGTCTATGGAGTGAAGACTCAGCAGATCCGCCAGCGAGTGCTCAGAGTGTTTACACA
AAAGGATTGA

Translation (329 aa):
MTLVSFFSFLSKPLIMLLSNSSWRLSQPSFLLVGIPGLEESQHWIALPLGILYLLALVGNVTILFIIWMD
PSLHQSMYLFLSMLAAIDLVLASSTAPKALAVLLVHAHEIGYIVCLIQMFFIHAFSSMESGVLVAMALDR
YVAICHPLHHSTILHPGVIGRIGMVVLVRGLLLLIPFPILLGTLIFCQATIIGHAYCEHMAVVKLACSET
TVNRAYGLTMALLVIGLDVLAIGVSYAHILQAVLKVPGSEARLKAFSTCGSHICVILVFYVPGIFSFLTH
RFGHHVPHHVHVLLATRYLLMPPALNPLVYGVKTQQIRQRVLRVFTQKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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