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Report for CCDS34544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34544.1 Public Homo sapiens 6 SLC35D3 24 110 108 CCDS HistoryNCBI Gene:340146Re-query CCDS DB by CCDS ID:34544.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331858.5 ENSP00000333591.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331858.5Link to Ensembl Protein Viewer:ENSP00000333591.4Re-query CCDS DB by Nucleotide ID:ENST00000331858Re-query CCDS DB by Protein ID:ENSP00000333591
Original member Current member NCBI NM_001008783.3 NP_001008783.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008783.3Link to Protein Sequence:NP_001008783.1Re-query CCDS DB by Nucleotide ID:NM_001008783Re-query CCDS DB by Protein ID:NP_001008783Link to BLAST:NP_001008783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008783.1 416 Q5M8T2 416 100% 0 0

Chromosomal Locations for CCDS 34544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136922429 136922867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136923885 136924696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGCGGCAGCTGTGCCGGGGCCGCGTGCTGGGCATCTCGGTGGCCATCGCGCACGGGGTCTTCTCGGGCT
CCCTCAACATCTTGCTCAAGTTCCTCATCAGCCGCTACCAGTTCTCCTTCCTGACCCTGGTGCAGTGCCT
GACCAGCTCCACCGCGGCGCTGAGCCTGGAGCTGCTGCGGCGCCTCGGGCTCATCGCCGTGCCCCCCTTC
GGTCTGAGCCTGGCGCGCTCCTTCGCGGGGGTCGCGGTGCTCTCCACGCTGCAGTCCAGCCTCACGCTCT
GGTCCCTGCGCGGCCTCAGCCTGCCCATGTACGTGGTCTTCAAGCGCTGCCTGCCCCTGGTCACCATGCT
CATCGGCGTCCTGGTGCTCAAGAACGGCGCGCCCTCGCCAGGGGTGCTGGCGGCGGTGCTCATCACCACC
TGCGGCGCCGCCCTGGCAGGAGCCGGCGACCTGACGGGCGACCCCATCGGGTACGTCACGGGAGTGCTGG
CGGTGCTGGTGCACGCTGCCTACCTGGTGCTCATCCAGAAGGCCAGCGCAGACACCGAGCACGGGCCGCT
CACCGCGCAGTACGTCATCGCCGTCTCTGCCACCCCGCTGCTGGTCATCTGCTCCTTCGCCAGCACCGAC
TCCATCCACGCCTGGACCTTCCCGGGCTGGAAGGACCCGGCCATGGTCTGCATCTTCGTGGCCTGCATCC
TGATCGGCTGCGCCATGAACTTCACCACGCTGCACTGCACCTACATCAATTCGGCCGTGACCACCAGCTT
CGTGGGTGTGGTGAAGAGCATCGCCACCATCACGGTGGGCATGGTGGCCTTCAGCGACGTGGAGCCCACC
TCTCTGTTCATTGCCGGCGTGGTGGTGAACACCCTGGGCTCTATCATTTACTGTGTGGCCAAGTTCATGG
AGACCAGAAAGCAAAGCAACTACGAGGACCTGGAGGCCCAGCCTCGGGGAGAGGAGGCGCAGCTAAGTGG
AGACCAGCTGCCGTTCGTGATGGAGGAGCTGCCCGGGGAGGGAGGAAATGGCCGGTCAGAAGGTGGGGAG
GCAGCAGGTGGCCCCGCTCAGGAGAGCAGGCAAGAGGTCAGGGGCAGCCCCCGAGGAGTCCCGCTGGTGG
CTGGGAGCTCTGAAGAAGGGAGCAGGAGGTCGTTAAAAGATGCTTACCTCGAGGTATGGAGGTTGGTTAG
GGGAACCAGGTATATGAAGAAGGATTATTTGATAGAAAACGAGGAGTTACCCAGTCCTTGA

Translation (416 aa):
MRQLCRGRVLGISVAIAHGVFSGSLNILLKFLISRYQFSFLTLVQCLTSSTAALSLELLRRLGLIAVPPF
GLSLARSFAGVAVLSTLQSSLTLWSLRGLSLPMYVVFKRCLPLVTMLIGVLVLKNGAPSPGVLAAVLITT
CGAALAGAGDLTGDPIGYVTGVLAVLVHAAYLVLIQKASADTEHGPLTAQYVIAVSATPLLVICSFASTD
SIHAWTFPGWKDPAMVCIFVACILIGCAMNFTTLHCTYINSAVTTSFVGVVKSIATITVGMVAFSDVEPT
SLFIAGVVVNTLGSIIYCVAKFMETRKQSNYEDLEAQPRGEEAQLSGDQLPFVMEELPGEGGNGRSEGGE
AAGGPAQESRQEVRGSPRGVPLVAGSSEEGSRRSLKDAYLEVWRLVRGTRYMKKDYLIENEELPSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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