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Report for CCDS45650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45650.1 Public Homo sapiens 17 SLFN14 24 110 108 CCDS HistoryNCBI Gene:342618Re-query CCDS DB by CCDS ID:45650.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45650.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000415846.3 ENSP00000391101.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415846.3Link to Ensembl Protein Viewer:ENSP00000391101.2Re-query CCDS DB by Nucleotide ID:ENST00000415846Re-query CCDS DB by Protein ID:ENSP00000391101
Original member Current member EBI ENST00000674182.1 ENSP00000501524.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000674182.1Link to Ensembl Protein Viewer:ENSP00000501524.1Re-query CCDS DB by Nucleotide ID:ENST00000674182Re-query CCDS DB by Protein ID:ENSP00000501524
Original member Current member NCBI NM_001129820.2 NP_001123292.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001129820.2Link to Protein Sequence:NP_001123292.1Re-query CCDS DB by Nucleotide ID:NM_001129820Re-query CCDS DB by Protein ID:NP_001123292Link to BLAST:NP_001123292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123292.1 912 P0C7P3-1 912 100% 0 0

Chromosomal Locations for CCDS 45650.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35548239 35549073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35552730 35553444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35554576 35554704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35557003 35558062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2739 nt):
ATGGAGAGTCTCAAGACTGATACTGAAATGCCGTATCCTGAGGTAATAGTAGATGTGGGCAGAGTGATTT
TTGGAGAAGAAAACAGGAAGAAGATGACCAACAGCTGTTTGAAAAGATCTGAGAATTCTAGAATTATCCG
GGCTATATGTGCACTGTTAAATTCTGGAGGTGGTGTGATCAAAGCAGAGATTGATGATAAAACCTATAGT
TACCAATGCCATGGGCTGGGACAGGATTTGGAAACTTCTTTTCAAAAGCTCCTTCCTTCAGGTTCACAGA
AATACCTTGACTACATGCAGCAGGGGCACAATCTCCTGATTTTTGTGAAGTCATGGAGCCCAGATGTTTT
CAGCCTTCCACTAAGGATTTGCAGCTTGCGCTCCAATTTGTATCGGAGAGATGTGACTTCTGCTATCAAC
TTGAGTGCTAGCAGTGCCCTGGAGCTTCTCAGAGAGAAGGGGTTTAGAGCCCAAAGAGGAAGACCAAGGG
TGAAGAAGTTGCATCCTCAGCAGGTTCTCAATAGATGCATTCAGGAAGAGGAAGATATGAGGATATTGGC
CTCAGAATTTTTTAAAAAGGACAAACTCATGTATAAGGAGAAACTCAACTTTACTGAGTCAACACATGTT
GAATTTAAAAGGTTCACCACCAAAAAAGTCATACCTCGGATTAAGGAAATGCTGCCTCATTATGTTTCTG
CATTTGCCAACACTCAAGGGGGATATGTCCTCATTGGGGTGGATGATAAGAGCAAAGAAGTGGTTGGATG
TAAGTGGGAAAAAGTGAATCCTGACTTACTAAAAAAAGAAATCGAAAACTGCATAGAAAAATTGCCTACA
TTCCACTTCTGCTGTGAGAAGCCAAAGGTAAATTTCACTACAAAAATCCTGAATGTGTACCAAAAAGATG
TCCTGGATGGTTATGTCTGTGTGATTCAAGTGGAGCCCTTCTGTTGCGTGGTGTTTGCAGAGGCCCCAGA
TTCCTGGATCATGAAAGACAATTCTGTCACACGGCTGACAGCTGAGCAGTGGGTGGTCATGATGCTGGAT
ACTCAGTCAGCTCCTCCCAGTTTGGTCACAGACTACAACTCTTGCCTGATTTCATCAGCTTCATCTGCAC
GAAAAAGTCCCGGATATCCCATAAAAGTCCACAAATTTAAGGAGGCTCTGCAACGACATTTGTTTCCAGT
GACACAGGAAGAGGTACAATTTAAACCAGAATCCCTCTGTAAGAAGCTGTTCTCAGATCATAAAGAACTG
GAGGGTTTAATGAAGACCCTGATACATCCTTGTTCTCAGGGGATTGTGATATTTTCTAGAAGCTGGGCTG
GTGATGTTGGCTTCAGGAAAGAACAGAATGTCCTGTGTGATGCTCTCCTGATAGCAGTTAACAGCCCCGT
GGTACTCTATACAATCTTAATAGACCCCAATTGGCCTGGAGGACTTGAATATGCCCGAAACACAGCTCAT
CAGTTAAAGCAGAAACTGCAAACTGTTGGTGGTTACACAGGGAAAGTGTGCATCATTCCAAGGCTGATAC
ACCTGAGCAGCACACAGAGTAGACCTGGTGAGATCCCCCTGCGTTACCCCAGGTCCTACAGGCTTGCTGA
TGAGGAGGAAATGGAAGACTTGCTGCAGGCTCTGGTGGTGGTCTCCCTGTCCTCCAGATCTCTTCTGAGT
GACCAGATGGGCTGTGAATTTTTCAACTTGCTCATAATGGAGCAGAGCCAGTTGCTTTCTGAGAGTCTTC
AGAAGACACGTGAATTATTCATCTACTGCTTTCCAGGAGTCAGGAAGACAGCCCTAGCCATAAAGATCAT
GGAGAAAATTAAGGACTTGTTTCACTGCAAACCAAAAGAGATCCTCTATGTTTGTGAAAGCGACTCCCTA
AAGGATTTTGTGACCCAACAAACCACCTGCCAAGCTGTGACCAGGAAAACTTTCATGCAAGGGGAGTTTC
TAAAGATTAAACACATAGTGATGGATGAGACTGAGAATTTCTGCAGCAAATATGGCAATTGGTACATGAA
GGCTAAGAACATCACCCATCCAAAGGCGAAGGGGACTGGAAGTGAAAACCTTCACCATGGGATTCTCTGG
CTTTTTCTTGACCCTTTTCAAATCCATCACGCAGATGTCAATGGCCTTCCCCCTCCATCTGCTCAGTTTC
CTCGAAAAACAATCACCAGTGGGATCCACTGTGCTCTGGAAATAGCGAAGGTTATGAAAGAAGAAATGAA
GAGGATCAAAGAAAATCCTCCCTCCAACATGTCTCCAGACACATTAGCATTGTTCAGCGAGACTGCCTAT
GAGGAAGCAACGTGTGCCCAGGCTCTGCCTGGGGTGTGTGAGACAAAGACTAATCTGACAACAGAACAAA
TAGCTAACTATGTGGCAAGAAAATGTCACAGCCTGTTCCAGTGTGGCTATCTGCCCAAAGATATAGCAAT
TCTGTGCAGGAGAGGGGAGGACAGAGGACGCTATAGGCTTGCACTACTCAAAGCAATGGAATTAATTGAG
ACCCACAGACCATCAGAGGTTGTGTTTAGCCCGGCCACCGGTGTTTGGGGAAGTCACATTGTTTTAGACA
GTATTCAGCAATTTTCAGGCCTGGAGAGGACTGTCGTGTTTGGGCTTAGTCCAGAATGTGACCAGTCAGA
GGAATTTCATAAGCTCTGCTTTGCTTCAAGAGCCATTAAACACCTCTACCTGCTTTATGAAAAGAGGGCA
GCCTACTGA

Translation (912 aa):
MESLKTDTEMPYPEVIVDVGRVIFGEENRKKMTNSCLKRSENSRIIRAICALLNSGGGVIKAEIDDKTYS
YQCHGLGQDLETSFQKLLPSGSQKYLDYMQQGHNLLIFVKSWSPDVFSLPLRICSLRSNLYRRDVTSAIN
LSASSALELLREKGFRAQRGRPRVKKLHPQQVLNRCIQEEEDMRILASEFFKKDKLMYKEKLNFTESTHV
EFKRFTTKKVIPRIKEMLPHYVSAFANTQGGYVLIGVDDKSKEVVGCKWEKVNPDLLKKEIENCIEKLPT
FHFCCEKPKVNFTTKILNVYQKDVLDGYVCVIQVEPFCCVVFAEAPDSWIMKDNSVTRLTAEQWVVMMLD
TQSAPPSLVTDYNSCLISSASSARKSPGYPIKVHKFKEALQRHLFPVTQEEVQFKPESLCKKLFSDHKEL
EGLMKTLIHPCSQGIVIFSRSWAGDVGFRKEQNVLCDALLIAVNSPVVLYTILIDPNWPGGLEYARNTAH
QLKQKLQTVGGYTGKVCIIPRLIHLSSTQSRPGEIPLRYPRSYRLADEEEMEDLLQALVVVSLSSRSLLS
DQMGCEFFNLLIMEQSQLLSESLQKTRELFIYCFPGVRKTALAIKIMEKIKDLFHCKPKEILYVCESDSL
KDFVTQQTTCQAVTRKTFMQGEFLKIKHIVMDETENFCSKYGNWYMKAKNITHPKAKGTGSENLHHGILW
LFLDPFQIHHADVNGLPPPSAQFPRKTITSGIHCALEIAKVMKEEMKRIKENPPSNMSPDTLALFSETAY
EEATCAQALPGVCETKTNLTTEQIANYVARKCHSLFQCGYLPKDIAILCRRGEDRGRYRLALLKAMELIE
THRPSEVVFSPATGVWGSHIVLDSIQQFSGLERTVVFGLSPECDQSEEFHKLCFASRAIKHLYLLYEKRA
AY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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