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Report for CCDS8678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8678.1 Public Homo sapiens 12 LMO3 24 110 108 CCDS HistoryNCBI Gene:55885Re-query CCDS DB by CCDS ID:8678.1Re-query CCDS DB by GeneID:55885See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320122.10 ENSP00000312856.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320122.10Link to Ensembl Protein Viewer:ENSP00000312856.6Re-query CCDS DB by Nucleotide ID:ENST00000320122Re-query CCDS DB by Protein ID:ENSP00000312856
Original member Current member EBI ENST00000354662.5 ENSP00000346689.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354662.5Link to Ensembl Protein Viewer:ENSP00000346689.1Re-query CCDS DB by Nucleotide ID:ENST00000354662Re-query CCDS DB by Protein ID:ENSP00000346689
Original member Current member EBI ENST00000441439.6 ENSP00000412479.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000441439.6Link to Ensembl Protein Viewer:ENSP00000412479.2Re-query CCDS DB by Nucleotide ID:ENST00000441439Re-query CCDS DB by Protein ID:ENSP00000412479
Original member Current member EBI ENST00000447609.5 ENSP00000413703.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447609.5Link to Ensembl Protein Viewer:ENSP00000413703.1Re-query CCDS DB by Nucleotide ID:ENST00000447609Re-query CCDS DB by Protein ID:ENSP00000413703
Original member Current member EBI ENST00000534946.5 ENSP00000439275.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000534946.5Link to Ensembl Protein Viewer:ENSP00000439275.1Re-query CCDS DB by Nucleotide ID:ENST00000534946Re-query CCDS DB by Protein ID:ENSP00000439275
Original member Current member EBI ENST00000537304.6 ENSP00000440099.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537304.6Link to Ensembl Protein Viewer:ENSP00000440099.1Re-query CCDS DB by Nucleotide ID:ENST00000537304Re-query CCDS DB by Protein ID:ENSP00000440099
Original member Current member EBI ENST00000541846.5 ENSP00000444393.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541846.5Link to Ensembl Protein Viewer:ENSP00000444393.1Re-query CCDS DB by Nucleotide ID:ENST00000541846Re-query CCDS DB by Protein ID:ENSP00000444393
Original member Current member EBI ENST00000540848.5 ENSP00000445751.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540848.5Link to Ensembl Protein Viewer:ENSP00000445751.1Re-query CCDS DB by Nucleotide ID:ENST00000540848Re-query CCDS DB by Protein ID:ENSP00000445751
Original member Current member EBI ENST00000535535.5 ENSP00000446115.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000535535.5Link to Ensembl Protein Viewer:ENSP00000446115.1Re-query CCDS DB by Nucleotide ID:ENST00000535535Re-query CCDS DB by Protein ID:ENSP00000446115
Original member Current member NCBI NM_001001395.2 NP_001001395.1 Accepted alive Link to Nucleotide Sequence:NM_001001395.2Link to Protein Sequence:NP_001001395.1Re-query CCDS DB by Nucleotide ID:NM_001001395Re-query CCDS DB by Protein ID:NP_001001395Link to BLAST:NP_001001395.1
Original member Current member NCBI NM_001243609.1 NP_001230538.1 Accepted alive Link to Nucleotide Sequence:NM_001243609.1Link to Protein Sequence:NP_001230538.1Re-query CCDS DB by Nucleotide ID:NM_001243609Re-query CCDS DB by Protein ID:NP_001230538Link to BLAST:NP_001230538.1
Original member Current member NCBI NM_001243610.1 NP_001230539.1 Accepted alive Link to Nucleotide Sequence:NM_001243610.1Link to Protein Sequence:NP_001230539.1Re-query CCDS DB by Nucleotide ID:NM_001243610Re-query CCDS DB by Protein ID:NP_001230539Link to BLAST:NP_001230539.1
Original member Current member NCBI NM_018640.5 NP_061110.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018640.5Link to Protein Sequence:NP_061110.2Re-query CCDS DB by Nucleotide ID:NM_018640Re-query CCDS DB by Protein ID:NP_061110Link to BLAST:NP_061110.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001395.1 145 Q8TAP4-1 145 100% 0 0
NP_001230538.1 145 Q8TAP4-1 145 100% 0 0
NP_001230539.1 145 Q8TAP4-1 145 100% 0 0
NP_061110.2 145 Q8TAP4-1 145 100% 0 0

Chromosomal Locations for CCDS 8678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 16551222 16551327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16560413 16560538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 16600655 16600860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGCTCTCAGTCCAGCCAGACACCAAGCCGAAAGGTTGTGCTGGCTGCAACCGAAAGATCAAGGACCGGT
ATCTTCTAAAGGCACTGGACAAATACTGGCATGAAGACTGCCTGAAGTGTGCCTGCTGTGACTGTCGCTT
GGGAGAGGTGGGCTCCACCCTGTACACTAAAGCTAATCTTATCCTTTGTCGCAGAGACTATCTGAGGCTC
TTTGGTGTAACGGGAAACTGCGCTGCCTGTAGTAAGCTCATCCCTGCCTTTGAGATGGTGATGCGTGCCA
AGGACAATGTTTACCACCTGGACTGCTTTGCATGTCAGCTTTGTAATCAGAGATTTTGTGTTGGAGACAA
ATTTTTCCTAAAGAATAACATGATCCTTTGCCAGACGGACTACGAGGAAGGTTTAATGAAAGAAGGTTAT
GCACCCCAGGTTCGCTGA

Translation (145 aa):
MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRL
FGVTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGY
APQVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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