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Report for CCDS46320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46320.1 Public Homo sapiens 2 FIGLA 24 110 108 CCDS HistoryNCBI Gene:344018Re-query CCDS DB by CCDS ID:46320.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46320.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332372.6 ENSP00000333097.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332372.6Link to Ensembl Protein Viewer:ENSP00000333097.6Re-query CCDS DB by Nucleotide ID:ENST00000332372Re-query CCDS DB by Protein ID:ENSP00000333097
Original member Current member NCBI NM_001004311.3 NP_001004311.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004311.3Link to Protein Sequence:NP_001004311.2Re-query CCDS DB by Nucleotide ID:NM_001004311Re-query CCDS DB by Protein ID:NP_001004311Link to BLAST:NP_001004311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004311.2 219 Q6QHK4 219 100% 0 0

Chromosomal Locations for CCDS 46320.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 70777367 70777382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70777637 70777671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70785415 70785639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70787649 70787801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 70790408 70790638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGACCCCGCGCCCGGCGTCCTAGATCCCCGCGCCGCGCCGCCCGCGCTCCTGGGCACCCCGCAAGCCG
AGGTGCTGGAGGACGTGTTGCGGGAGCAGTTCGGGCCGCTGCCCCAGCTGGCCGCTGTCTGCCGGCTCAA
GCGGCTGCCCTCGGGCGGCTACTCGTCCACTGAAAACCTCCAGTTGGTGCTGGAGCGGCGGCGTGTGGCC
AACGCCAAGGAGCGTGAGCGGATAAAAAATCTCAACCGTGGTTTTGCCAGATTGAAGGCACTTGTGCCAT
TTCTTCCCCAAAGCAGGAAGCCCAGCAAAGTTGATATCCTTAAAGGTGCGACTGAATATATACAGGTTCT
CAGTGATCTTTTGGAAGGAGCCAAAGACTCAAAGAAACAAGACCCAGATGAGCAGAGCTATAGTAACAAC
AGTTCTGAATCACATACATCCTCGGCAAGACAGCTGTCAAGAAACATCACCCAACATATCAGCTGTGCTT
TCGGCTTGAAGAATGAAGAGGAAGGGCCTTGGGCAGATGGTGGCAGTGGTGAGCCAGCACACGCTTGTCG
CCACAGTGTGATGTCTACGACTGAAATTATCTCCCCAACCAGAAGTCTGGATAGATTCCCAGAAGTAGAA
CTGCTGAGTCACAGACTTCCACAAGTATGA

Translation (219 aa):
MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVA
NAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKDSKKQDPDEQSYSNN
SSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSGEPAHACRHSVMSTTEIISPTRSLDRFPEVE
LLSHRLPQV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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