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Report for CCDS57361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57361.1 Public Mus musculus 5 Pramel42 23 108 98 CCDS HistoryNCBI Gene:100041102Re-query CCDS DB by CCDS ID:57361.1Re-query CCDS DB by GeneID:100041102See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57361.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178330.1 ENSMUSP00000137485.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178330.1Link to Ensembl Protein Viewer:ENSMUSP00000137485.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178330Re-query CCDS DB by Protein ID:ENSMUSP00000137485
Original member Current member EBI ENSMUST00000202642.3 ENSMUSP00000144005.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202642.3Link to Ensembl Protein Viewer:ENSMUSP00000144005.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202642Re-query CCDS DB by Protein ID:ENSMUSP00000144005
Original member Current member NCBI NM_001243937.1 NP_001230866.1 Accepted alive Link to Nucleotide Sequence:NM_001243937.1Link to Protein Sequence:NP_001230866.1Re-query CCDS DB by Nucleotide ID:NM_001243937Re-query CCDS DB by Protein ID:NP_001230866Link to BLAST:NP_001230866.1
Original member Current member NCBI NM_001243938.1 NP_001230867.1 Accepted alive Link to Nucleotide Sequence:NM_001243938.1Link to Protein Sequence:NP_001230867.1Re-query CCDS DB by Nucleotide ID:NM_001243938Re-query CCDS DB by Protein ID:NP_001230867Link to BLAST:NP_001230867.1

Chromosomal Locations for CCDS 57361.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 94534849 94535135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94535800 94536390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94537361 94537928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAGTGGTCAGACCCCACCCACACTCCAGAAGCGAGCAAGGCAGACACAGCTGAGAGATGAGGCTTTGG
CCATATCCCCTCTGGAGAACGTGCCAGCTGTGTACGTCCCATGGCTGTTCCAAGAGGCCTTTGCTGGCAG
ACACAACTCGCTCATAAAGACAATGGTGGCAGCCTGGCCTTTCCAATATCTCCCTGTGGGGTCATTGATA
AATATGCATAACCTGGAAACCTTGCAAGCTCTGCTAGATGGTGTAGACAGGAGACTGACAAGAAAATTTC
CCCCCGGGAGGCCAAAACTTCAGGTTCTCGACATGAGAAATGTGCACCATGTCTTCTGGAACATAGGGAG
CGATGCAAATGACAGTGACTCTGATGCAGAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCTTCCCAGA
TATGCACTGAGGCAGCGTCTGAAGATCATAGTTGATCTGTCAATCAGTTCTCAGCTCAATGAAGAAAAAG
CATATTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTCCATAAATTTCTGCTGTACAAAGATGAAGATCTG
GGATGCACCAGACAAAGTTATCAGAGAAATCATGAATGTTTTTCATCCAGAGCACATTACAGAATTAGAA
CTGTATACCGACTGGACTCTGTTGCGGCTGGCACATTTTGCTCCCTACTTTGGGCAGATGAAAAATCTTG
AAAAAGTCTTCCTGGCACCACTCCACAAGAATACCTCCCCTATTATGAATATAACAGGGGCCTCAAAAGT
CAAGTGTATCAAAAAGATTATTTCTCAGTTTTCCAAATTCAACTGTCTCCAACATGTCTTCATGAAACGT
GTCCATTTTCTCAGAGACCACCTGCATCAGATCCTAGGGTGCCTGAGGACGCCCTTGCAGACCCTCTCCA
TCACTCACTGCCTAATTTCACAGACAGACTTGGATTCCTTTTCCTGCTGTCACAACCTTTTTAAGTTAAA
AAATCTGGAAATCAGAGGAGTGACACTATTTGCTCTCGATCTTATGCCTCTGAGAGGTCTCCTAGGAAAA
CTGGCAGGTACTCTTAAGTCTCTGGATTTTCAGTGGTGTAGCATGAAGGACTCCCAGCTCATTGTCCTCT
TACCTGCCCTCAGTCAATGCTCTCAGCTCAACCAGATCAACTTCTACAGCAATGACTTCTCCATGGCCAT
CCTGAAGGACCTTTTGCAGCACACAGCCACCTGGAGCAAGATGAATGTGGAACAATACCCTGTCCCTCTG
GAGTGCTATGATGCATTGGGTAATGTCTCCAGAGAAAGATTTGTGGAACTTTGTCAGGAGCTCATGGATA
CCCTCAGGGCCAAAAGAGAGCCTAAGAGCATATCTTTTGCAACAAATGTCTGCCAAAACTGTGGCAAGAC
CTGTGTCTATGGCCAGGGGGCAAGGCTTTGTTCCTGTTTGCAGTAA

Translation (481 aa):
MSGQTPPTLQKRARQTQLRDEALAISPLENVPAVYVPWLFQEAFAGRHNSLIKTMVAAWPFQYLPVGSLI
NMHNLETLQALLDGVDRRLTRKFPPGRPKLQVLDMRNVHHVFWNIGSDANDSDSDAETLDEKQVVKALPR
YALRQRLKIIVDLSISSQLNEEKAYFLNWAKQRKGSINFCCTKMKIWDAPDKVIREIMNVFHPEHITELE
LYTDWTLLRLAHFAPYFGQMKNLEKVFLAPLHKNTSPIMNITGASKVKCIKKIISQFSKFNCLQHVFMKR
VHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGVTLFALDLMPLRGLLGK
LAGTLKSLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSNDFSMAILKDLLQHTATWSKMNVEQYPVPL
ECYDALGNVSRERFVELCQELMDTLRAKREPKSISFATNVCQNCGKTCVYGQGARLCSCLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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