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Report for CCDS22933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22933.1 Public Mus musculus 9 Tbx20 23 108 98 CCDS HistoryNCBI Gene:57246Re-query CCDS DB by CCDS ID:22933.1Re-query CCDS DB by GeneID:57246See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052946.11 ENSMUSP00000052591.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052946.11Link to Ensembl Protein Viewer:ENSMUSP00000052591.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000052946Re-query CCDS DB by Protein ID:ENSMUSP00000052591
Original member NCBI NM_194263.2 NP_919239.1 Updated not alive Link to Nucleotide Sequence:NM_194263.2Link to Protein Sequence:NP_919239.1Re-query CCDS DB by Nucleotide ID:NM_194263Re-query CCDS DB by Protein ID:NP_919239
Current member NCBI NM_194263.3 NP_919239.1 Accepted alive Link to Nucleotide Sequence:NM_194263.3Link to Protein Sequence:NP_919239.1Re-query CCDS DB by Nucleotide ID:NM_194263Re-query CCDS DB by Protein ID:NP_919239Link to BLAST:NP_919239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919239.1 445 Q9ES03-1 445 100% 0 0

Chromosomal Locations for CCDS 22933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 24725452 24725792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24727763 24727872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24750312 24750388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24758726 24758884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24765666 24765774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24769653 24769817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24770680 24770929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 24773719 24773845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGAGTTCACGGCGTCGCCCAAGCCCCAGCTCTCCTCTCGAGCCAATGCCTTCTCCATCGCCGCGCTTA
TGTCCAGCGGCGGCCCCAAGGAGAAGGAGGCAGCAGAGAACACCATCAAACCCCTGGAACAATTTGTGGA
GAAATCATCATGTGCCCAGCCACTGGGTGAGCTGACGAGTCTGGATGCTCACGCGGAGTTTGGCGGCGGG
GGCGGCAGCCCATCCTCATCCTCTCTGTGCACAGAGCCACTGATACCCACCACCCCCATCATCCCCAGCG
AAGAGATGGCTAAAATCGCCTGCAGCCTGGAAACGAAGGAGCTCTGGGACAAATTCCATGAACTGGGCAC
GGAGATGATAATCACCAAGTCTGGCAGGAGGATGTTCCCCACCATCCGCGTGTCATTTTCTGGAGTGGAT
CCTGAGTCCAAGTATATAGTCCTGATGGACATCGTCCCGGTGGACAACAAGAGATACCGCTATGCCTACC
ACCGGTCATCCTGGCTGGTGGCTGGCAAAGCTGATCCCCCGCTGCCAGCCAGGCTCTACGTGCACCCAGA
CTCCCCCTTTACTGGCGAGCAGCTCCTCAAACAGATGGTGTCTTTTGAAAAGGTGAAGCTCACCAACAAT
GAACTGGATCAACACGGCCATATAATTTTGAATTCAATGCATAAGTACCAGCCACGGGTGCACATCATAA
AGAAGAAAGACCACACGGCCTCCTTGCTCAATCTGAAGTCAGAAGAATTCAGGACGTTCATCTTTCCAGA
GACAGTTTTCACAGCAGTCACAGCCTACCAGAACCAACTGATAACCAAGCTGAAAATAGACAGCAATCCG
TTTGCCAAAGGATTCCGGGACTCCTCCAGGCTCACTGACATTGAGAGGGAGAGTGTGGAGAGCCTGATCC
AGAAGCATTCCTATGCCCGGTCACCCATCCGCACCTATGGGGAAGAGGATGTTCTGGGGGAGGAGAGTCA
AACAACTCAGAGTCGAGGATCAGCCTTTACAACATCTGACAATTTGTCTCTCAGTTCCTGGGTATCGTCA
TCTTCCAGTTTTCCTGGATTTCAGCATCCACAGCCCCTGACTGCTCTTGGTACCAGTACAGCATCCATAG
CGACACCGATTCCTCACCCTATACAGGGTTCTCTGCCACCATATAGCCGCCTGGGAATGCCTCTGACCCC
ATCTGCAATAGCCAGCTCCATGCAGGGAAGTGGTCCCACGTTCCCTTCATTCCACATGCCTAGATACCAT
CACTACTTCCAGCAGGGGCCCTACGCTGCCATCCAAGGACTTCGCCACTCCTCCGCTGTGATGACGCCAT
TTGTATGA

Translation (445 aa):
MEFTASPKPQLSSRANAFSIAALMSSGGPKEKEAAENTIKPLEQFVEKSSCAQPLGELTSLDAHAEFGGG
GGSPSSSSLCTEPLIPTTPIIPSEEMAKIACSLETKELWDKFHELGTEMIITKSGRRMFPTIRVSFSGVD
PESKYIVLMDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHPDSPFTGEQLLKQMVSFEKVKLTNN
ELDQHGHIILNSMHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDSNP
FAKGFRDSSRLTDIERESVESLIQKHSYARSPIRTYGEEDVLGEESQTTQSRGSAFTTSDNLSLSSWVSS
SSSFPGFQHPQPLTALGTSTASIATPIPHPIQGSLPPYSRLGMPLTPSAIASSMQGSGPTFPSFHMPRYH
HYFQQGPYAAIQGLRHSSAVMTPFV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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