NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54595.1 Public Homo sapiens 3 ITIH1 24 110 108 CCDS HistoryNCBI Gene:3697Re-query CCDS DB by CCDS ID:54595.1Re-query CCDS DB by GeneID:3697See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 54595.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537050.5 ENSP00000443847.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537050.5Link to Ensembl Protein Viewer:ENSP00000443847.1Re-query CCDS DB by Nucleotide ID:ENST00000537050Re-query CCDS DB by Protein ID:ENSP00000443847
Original member Current member NCBI NM_001166435.2 NP_001159907.1 Accepted alive Link to Nucleotide Sequence:NM_001166435.2Link to Protein Sequence:NP_001159907.1Re-query CCDS DB by Nucleotide ID:NM_001166435Re-query CCDS DB by Protein ID:NP_001159907Link to BLAST:NP_001159907.1
Original member Current member NCBI NM_001166436.2 NP_001159908.1 Accepted alive Link to Nucleotide Sequence:NM_001166436.2Link to Protein Sequence:NP_001159908.1Re-query CCDS DB by Nucleotide ID:NM_001166436Re-query CCDS DB by Protein ID:NP_001159908Link to BLAST:NP_001159908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001159907.1 623 P19827-3 623 100% 0 0
NP_001159908.1 623 P19827-3 623 100% 0 0

Chromosomal Locations for CCDS 54595.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52782202 52782267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52782957 52783125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52783214 52783339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52784296 52784477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52785044 52785229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52786295 52786434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52786945 52787099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52787188 52787202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52787592 52787612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52787986 52788066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52788232 52788345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52789653 52789854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52790749 52790921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52791517 52791628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52791782 52791911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGAACAAGAACGTGGTTTTTGTGATTGACATCAGTGGCTCCATGAGAGGCCAGAAAGTGAAGCAGACCA
AGGAGGCACTCCTTAAAATTCTGGGGGACATGCAGCCAGGGGACTACTTTGACCTGGTTCTTTTTGGGAC
TCGAGTACAATCGTGGAAGGGCTCGCTGGTGCAAGCATCTGAGGCCAACCTACAAGCAGCTCAAGACTTT
GTGCGGGGCTTTTCCCTGGATGAGGCCACAAACCTGAATGGAGGTTTGCTCCGGGGAATTGAGATCTTGA
ACCAAGTTCAGGAAAGCCTCCCAGAACTCAGCAACCATGCCTCAATACTCATCATGTTGACAGATGGCGA
TCCCACAGAGGGGGTGACGGACCGTTCCCAAATCCTCAAGAACGTCCGCAACGCCATCCGGGGCAGGTTC
CCGCTCTACAACCTGGGTTTCGGCCACAATGTGGACTTTAACTTTCTGGAGGTCATGTCCATGGAGAACA
ACGGACGGGCCCAGAGAATCTACGAGGACCATGATGCCACCCAGCAGCTGCAGGGTTTCTACAGCCAGGT
AGCCAAACCCCTGCTGGTGGATGTGGATTTGCAGTACCCCCAGGATGCTGTCTTGGCCCTGACCCAGAAC
CACCATAAACAGTACTACGAAGGCTCAGAGATTGTGGTGGCCGGGCGCATTGCTGACAACAAACAGAGCA
GCTTCAAGGCTGATGTGCAGGCCCATGGGGAGGGACAAGAATTCAGTATAACCTGCCTAGTGGATGAGGA
GGAGATGAAGAAACTGCTCCGAGAGCGTGGCCACATGCTGGAGAACCACGTCGAGCGCCTCTGGGCCTAC
CTCACCATCCAGGAGCTGCTGGCCAAGCGGATGAAGGTGGACAGGGAGGAGAGGGCCAACCTGTCATCCC
AGGCCCTGCAGATGTCGCTGGACTATGGGTTTGTGACCCCACTGACCTCCATGAGCATCAGGGGCATGGC
GGACCAGGACGGCCTGAAGCCCACCATCGACAAGCCCTCAGAGGATTCTCCGCCTTTGGAGATGCTGGGA
CCCAGAAGGACGTTCGTGCTGTCAGCCTTGCAGCCTTCTCCTACTCATTCCAGCTCCAATACCCAGCGGC
TGCCAGACCGAGTGACCGGCGTGGACACAGACCCTCACTTCATCATCCACGTGCCCCAGAAAGAGGACAC
CCTGTGCTTCAACATCAATGAGGAGCCTGGTGTTATCCTGAGCCTGGTACAGGACCCCAACACAGGCTTC
TCAGTGAATGGACAGCTCATTGGCAACAAGGCCAGGAGCCCTGGGCAGCATGACGGCACGTACTTCGGGC
GGCTGGGAATCGCAAACCCTGCCACGGACTTTCAGTTGGAAGTGACTCCTCAGAACATTACGCTGAACCC
CGGCTTTGGTGGGCCTGTGTTTTCCTGGAGGGACCAAGCTGTGCTGCGGCAGGACGGGGTGGTGGTGACC
ATCAACAAGAAGAGGAACCTGGTGGTGTCTGTGGACGACGGTGGCACCTTTGAGGTTGTTTTGCACCGAG
TGTGGAAGGGGAGCTCGGTCCACCAGGACTTCCTGGGCTTCTATGTGCTGGACAGTCATCGGATGTCAGC
CCGGACGCACGGGCTGCTGGGGCAATTTTTCCACCCCATCGGTTTTGAAGTGTCTGACATCCACCCAGGC
TCTGACCCCACAAAGCCAGATGCCACGATGGTGGTGAGGAACCGCCGGCTCACGGTCACCAGGGGTTTGC
AAAAAGACTACAGCAAGGACCCGTGGCATGGGGCCGAGGTGTCCTGCTGGTTCATTCACAACAATGGGGC
TGGACTCATCGATGGTGCCTACACTGATTATATCGTCCCCGACATCTTCTGA

Translation (623 aa):
MNKNVVFVIDISGSMRGQKVKQTKEALLKILGDMQPGDYFDLVLFGTRVQSWKGSLVQASEANLQAAQDF
VRGFSLDEATNLNGGLLRGIEILNQVQESLPELSNHASILIMLTDGDPTEGVTDRSQILKNVRNAIRGRF
PLYNLGFGHNVDFNFLEVMSMENNGRAQRIYEDHDATQQLQGFYSQVAKPLLVDVDLQYPQDAVLALTQN
HHKQYYEGSEIVVAGRIADNKQSSFKADVQAHGEGQEFSITCLVDEEEMKKLLRERGHMLENHVERLWAY
LTIQELLAKRMKVDREERANLSSQALQMSLDYGFVTPLTSMSIRGMADQDGLKPTIDKPSEDSPPLEMLG
PRRTFVLSALQPSPTHSSSNTQRLPDRVTGVDTDPHFIIHVPQKEDTLCFNINEEPGVILSLVQDPNTGF
SVNGQLIGNKARSPGQHDGTYFGRLGIANPATDFQLEVTPQNITLNPGFGGPVFSWRDQAVLRQDGVVVT
INKKRNLVVSVDDGGTFEVVLHRVWKGSSVHQDFLGFYVLDSHRMSARTHGLLGQFFHPIGFEVSDIHPG
SDPTKPDATMVVRNRRLTVTRGLQKDYSKDPWHGAEVSCWFIHNNGAGLIDGAYTDYIVPDIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH