NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58327.1 Public Homo sapiens 14 SLC39A9 24 110 108 CCDS HistoryNCBI Gene:55334Re-query CCDS DB by CCDS ID:58327.1Re-query CCDS DB by GeneID:55334See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58327.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000556605.5 ENSP00000452385.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556605.5Link to Ensembl Protein Viewer:ENSP00000452385.1Re-query CCDS DB by Nucleotide ID:ENST00000556605Re-query CCDS DB by Protein ID:ENSP00000452385
Original member Current member NCBI NM_001252150.2 NP_001239079.1 Accepted alive Link to Nucleotide Sequence:NM_001252150.2Link to Protein Sequence:NP_001239079.1Re-query CCDS DB by Nucleotide ID:NM_001252150Re-query CCDS DB by Protein ID:NP_001239079Link to BLAST:NP_001239079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239079.1 232 Q9NUM3-3 232 100% 0 0

Chromosomal Locations for CCDS 58327.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69399370 69399465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69424094 69424202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69442069 69442266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69453241 69453309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69454812 69454897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69455732 69455866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69461697 69461702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGATGATTTCATCTCCATTAGCCTGCTGTCTCTGGCTATGTTGGTGGGATGTTACGTGGCCGGAATCA
TTCCCTTGGCTGTTAATTTCTCAGAGGAACGACTGAAGCTGGTGACTGTTTTGGGTGCTGGCCTTCTCTG
TGGAACTGCTCTGGCAGTCATCGTGCCTGAAGGAGTACATGCCCTTTATGAAGATATTCTTGAGGGAAAA
CACCACCAAGCAAGTGAAACACATAATGTGATTGCATCAGACAAAGCAGCAGAAAAATCAGTTGTCCATG
AACATGAGCACAGCCACGACCACACACAGCTGCATGCCTATATTGGTGTTTCCCTCGTTCTGGGCTTCGT
TTTCATGTTGCTGGTGGACCAGATTGGTAACTCCCATGTGCATTCTACTGACGATCCAGAAGCAGCAAGG
TCTAGCAATTCCAAAATCACCACCACGCTGGGTCTGGTTGTCCATGCTGCAGCTGATGGTGTTGCTTTGG
GAGCAGCAGCATCTACTTCACAGACCAGTGTCCAGTTAATTGTGTTTGTGGCAATCATGCTACATAAGGC
ACCAGCTGCTTTTGGACTGGTTTCCTTCTTGATGCATGCTGGCTTAGAGCGGAATCGAATCAGAAAGCAC
TTGCTGGTCTTTGCATTGGCAGCACCAGTTATGTCCATGGTGACATACTTAGGACTGAGTAAGGATTAG

Translation (232 aa):
MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYEDILEGK
HHQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTDDPEAAR
SSNSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKH
LLVFALAAPVMSMVTYLGLSKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH