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Report for CCDS58327.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58327.1 Public Homo sapiens 14 SLC39A9 24 110 108 CCDS HistoryNCBI Gene:55334Re-query CCDS DB by CCDS ID:58327.1Re-query CCDS DB by GeneID:55334See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58327.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000556605.5 ENSP00000452385.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556605.5Link to Ensembl Protein Viewer:ENSP00000452385.1Re-query CCDS DB by Nucleotide ID:ENST00000556605Re-query CCDS DB by Protein ID:ENSP00000452385
Original member Current member NCBI NM_001252150.2 NP_001239079.1 Accepted alive Link to Nucleotide Sequence:NM_001252150.2Link to Protein Sequence:NP_001239079.1Re-query CCDS DB by Nucleotide ID:NM_001252150Re-query CCDS DB by Protein ID:NP_001239079Link to BLAST:NP_001239079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239079.1 232 Q9NUM3-3 232 100% 0 0

Chromosomal Locations for CCDS 58327.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 69399370 69399465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69424094 69424202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69442069 69442266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69453241 69453309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69454812 69454897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69455732 69455866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 69461697 69461702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGATGATTTCATCTCCATTAGCCTGCTGTCTCTGGCTATGTTGGTGGGATGTTACGTGGCCGGAATCA
TT
CCCTTGGCTGTTAATTTCTCAGAGGAACGACTGAAGCTGGTGACTGTTTTGGGTGCTGGCCTTCTCTG
T
GGAACTGCTCTGGCAGTCATCGTGCCTGAAGGAGTACATGCCCTTTATGAAGATATTCTTGAGGGAAAA
CAC
CACCAAGCAAGTGAAACACATAATGTGATTGCATCAGACAAAGCAGCAGAAAAATCAGTTGTCCATG
AA
CATGAGCACAGCCACGACCACACACAGCTGCATGCCTATATTGGTGTTTCCCTCGTTCTGGGCTTCGT
T
TTCATGTTGCTGGTGGACCAGATTGGTAACTCCCATGTGCATTCTACTGACGATCCAGAAGCAGCAAGG
TCT
AGCAATTCCAAAATCACCACCACGCTGGGTCTGGTTGTCCATGCTGCAGCTGATGGTGTTGCTTTGG
GA
GCAGCAGCATCTACTTCACAGACCAGTGTCCAGTTAATTGTGTTTGTGGCAATCATGCTACATAAGGC
A
CCAGCTGCTTTTGGACTGGTTTCCTTCTTGATGCATGCTGGCTTAGAGCGGAATCGAATCAGAAAGCAC
TTG
CTGGTCTTTGCATTGGCAGCACCAGTTATGTCCATGGTGACATACTTAGGACTGAGTAAGGATTAG


Translation (232 aa):
MDDFISISLLSLAMLVGCYVAGIIPLAVNFSEERLKLVTVLGAGLLCGTALAVIVPEGVHALYEDILEGK
H
HQASETHNVIASDKAAEKSVVHEHEHSHDHTQLHAYIGVSLVLGFVFMLLVDQIGNSHVHSTD
DPEAAR
S
SNSKITTTLGLVVHAA
ADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLMHAGLERNRIRKH
L
LVFALAAPVMSMVTYLGLSK
D



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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