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Report for CCDS88823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88823.1 Public Mus musculus 15 Tafa5 23 108 98 CCDS HistoryNCBI Gene:106014Re-query CCDS DB by CCDS ID:88823.1Re-query CCDS DB by GeneID:106014See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000230414.1 ENSMUSP00000155322.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230414.1Link to Ensembl Protein Viewer:ENSMUSP00000155322.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230414Re-query CCDS DB by Protein ID:ENSMUSP00000155322
Original member Current member NCBI NM_001252310.1 NP_001239239.1 Accepted alive Link to Nucleotide Sequence:NM_001252310.1Link to Protein Sequence:NP_001239239.1Re-query CCDS DB by Nucleotide ID:NM_001252310Re-query CCDS DB by Protein ID:NP_001239239Link to BLAST:NP_001239239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239239.1 132 Q91WE9-1 132 100% 0 0

Chromosomal Locations for CCDS 88823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 87544492 87544603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 87681480 87681629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 87720502 87720629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 87757297 87757305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGGCGCCATCGCCCAGGACCAGCAGCCGGCAAGATGCGACCGCCCTGCCCAGCATGTCCTCAACTTTTT
GGGCATTCATGATCCTGGCCAGCCTGCTCATCGCCTACTGCAGTCAGCTGGCCGCTGGAACCTGTGAGAT
TGTGACCCTAGACCGGGACAGCAGCCAGCCACGGAGGACGATCGCCCGGCAGACAGCACGCTGTGCATGC
AGAAAGGGGCAGATAGCAGGCACCACTCGAGCCCGGCCTGCTTGTGTGGACGCTCGAATTATCAAGACAA
AGCAGTGGTGTGACATGCTTCCTTGCCTGGAGGGGGAAGGCTGTGACTTGTTAATCAACCGGTCAGGCTG
GACTTGCACACAGCCCGGAGGGCGGATAAAGACCACCACGGTCTCCTGA

Translation (132 aa):
MAPSPRTSSRQDATALPSMSSTFWAFMILASLLIAYCSQLAAGTCEIVTLDRDSSQPRRTIARQTARCAC
RKGQIAGTTRARPACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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