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Report for CCDS16747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16747.1 Public Mus musculus 2 Ubox5 23 108 98 CCDS HistoryNCBI Gene:140629Re-query CCDS DB by CCDS ID:16747.1Re-query CCDS DB by GeneID:140629See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028761.4 ENSMUSP00000028761.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028761.4Link to Ensembl Protein Viewer:ENSMUSP00000028761.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028761Re-query CCDS DB by Protein ID:ENSMUSP00000028761
Original member Current member NCBI NM_001255993.1 NP_001242922.1 Accepted alive Link to Nucleotide Sequence:NM_001255993.1Link to Protein Sequence:NP_001242922.1Re-query CCDS DB by Nucleotide ID:NM_001255993Re-query CCDS DB by Protein ID:NP_001242922Link to BLAST:NP_001242922.1
Original member Current member NCBI NM_001255994.1 NP_001242923.1 Accepted alive Link to Nucleotide Sequence:NM_001255994.1Link to Protein Sequence:NP_001242923.1Re-query CCDS DB by Nucleotide ID:NM_001255994Re-query CCDS DB by Protein ID:NP_001242923Link to BLAST:NP_001242923.1
Original member Current member NCBI NM_080562.5 NP_542129.2 Accepted alive Link to Nucleotide Sequence:NM_080562.5Link to Protein Sequence:NP_542129.2Re-query CCDS DB by Nucleotide ID:NM_080562Re-query CCDS DB by Protein ID:NP_542129Link to BLAST:NP_542129.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001242922.1 539 Q925F4 539 100% 0 0
NP_001242923.1 539 Q925F4 539 100% 0 0
NP_542129.2 539 Q925F4 539 100% 0 0

Chromosomal Locations for CCDS 16747.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130591806 130592014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130597298 130597456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130599514 130600711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130602557 130602610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGTAGTAAATCTTTGCCTCCCACAGTTCAGACCAAGAATTCACTGCAACAAGGTGTCAGCTGATGGTT
ACGAAGTAGAAAATCTCATCTCTGAAGACCTCATAAAAAGAAGCCATGGCTTTAGGACAGAGTATTTCAT
TAGACCTCCAATCTATGTGACAGTTTCCTTTCCCTTTAATGTGGAAATCTGTAGGGTTAATATAGATCTC
ACAACTGGGGGATATCAGAATGTCTCTGGCCTGGAATTATATACATCTGCCTTATCTAGCAGAGTCTCTC
AGGATGCCCAGGACTGCTGGACTACAGGCCCGGTGGAGACATCTGTCCCAGACAAGGAGGCCTTCACCTT
GGTAGGCAAAGTCTTACTGAAAAACCAGAACCATGTGGTGTTCAGCCACAGGGGCTTCAAGGCCAGGCCA
CCTTTTAGCCCGATGGAAGTCACTCTCCTCTCTCCTGCTGTTGTAGCCCAGGAACTCTGGAATAAAGGGG
CTCTTTCCCTTAGCCATGTGGCCCACCTCAAGATCGGCATCACCCATGTGACGGGCAGTGGCATCTCTTG
CATCAAGCGTTTAGAGGTGTGGGGTCAGCCAGCCAGGACCTGCTCTCAGGAGGTGATAAATAGTGTCTTG
TTGATAGCCTCAGAAAGCCTGCCTCAGGACTTGGATCTGCATGCTCCAGCCTTGCCCATGGAGAGTGACT
GTGACCCTGGGGGTCAGTCTGAGAGCCAGCACTCTCCCTGTACCTTACAGGACATGTCTGAGGTGGAAAG
TGACGTTCCAGAGGAGTTCCTGGATCCTATCACCCTGGAGATCATGCCATGCCCCATGCTGCTGCCCTCA
GGCAAGGTCATTGACCAGAGCACTCTGGAGAAGTGTAACCTCAGTGAAGCTGCTTGGGGCCGAGTGCCCA
GTGACCCTTTCACAGGGCTAGCCTTTACTCCACAGTCCCAGCCCCTCCCTCATCCTTCCCTGAAAGCCCG
GATCGACCGGTTCCTACTCCAGCACTCTATTTCAGGCTGCCGCCTGCTTGGGAGAGCACAGACTCCATCA
GCAATGACCCCTTCTGTCATTACCCTGCCCTCAAGGAAAAGGAAGACAGAGCAGGCTGAACACAGCTCAC
ACTACAGCCTTGGCATGAGTGCGTCTTCCTCTGCCACAAGCCCTTTATTCTCACCTACTACCTCAGAGCC
AACTGCCAAGAAGATGAAAGCCACCAGTGAGCTTGGCCTGACGGACATGGACTGTTCAGCAGGTCCAGTG
TCCCATGAGCAGAAGCTGGCGCAAAGTCTGGAAATTGCCCTGACTTCTACCCTTGGCTCCATGCCTTCCT
TCACTGCCCGGCTCACCAAAGGGCAGCTCCAGCTGGGCACAAGAGGGAGCAGTGCTTGCAGGAGGCCAGC
CTCCAGCTCCGAGCATCCAAGGAGTGTTTCTGGCCCAGAGTGTGCCTCCTGCAAACAAGCATTTTCTTCC
TACTCCACAAATGAGCCTGTGTACCAGCTGCCCTGTGGTCACCTTCTGTGCCGACCCTGCCTGAGTGAGA
AGCAACGTTCCCAGCCCATGATGTGCACAGCCTGTCGGCAGCCAGTCACCAGCCAGGATGTGCTGCGGGT
CCATTTCTGA

Translation (539 aa):
MVVNLCLPQFRPRIHCNKVSADGYEVENLISEDLIKRSHGFRTEYFIRPPIYVTVSFPFNVEICRVNIDL
TTGGYQNVSGLELYTSALSSRVSQDAQDCWTTGPVETSVPDKEAFTLVGKVLLKNQNHVVFSHRGFKARP
PFSPMEVTLLSPAVVAQELWNKGALSLSHVAHLKIGITHVTGSGISCIKRLEVWGQPARTCSQEVINSVL
LIASESLPQDLDLHAPALPMESDCDPGGQSESQHSPCTLQDMSEVESDVPEEFLDPITLEIMPCPMLLPS
GKVIDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQSQPLPHPSLKARIDRFLLQHSISGCRLLGRAQTPS
AMTPSVITLPSRKRKTEQAEHSSHYSLGMSASSSATSPLFSPTTSEPTAKKMKATSELGLTDMDCSAGPV
SHEQKLAQSLEIALTSTLGSMPSFTARLTKGQLQLGTRGSSACRRPASSSEHPRSVSGPECASCKQAFSS
YSTNEPVYQLPCGHLLCRPCLSEKQRSQPMMCTACRQPVTSQDVLRVHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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