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Report for CCDS5866.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5866.1 Public Homo sapiens 7 SSBP1 24 110 108 CCDS HistoryNCBI Gene:6742Re-query CCDS DB by CCDS ID:5866.1Re-query CCDS DB by GeneID:6742See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5866.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265304.11 ENSP00000265304.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265304.11Link to Ensembl Protein Viewer:ENSP00000265304.6Re-query CCDS DB by Nucleotide ID:ENST00000265304Re-query CCDS DB by Protein ID:ENSP00000265304
Original member Current member EBI ENST00000484178.5 ENSP00000419388.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484178.5Link to Ensembl Protein Viewer:ENSP00000419388.1Re-query CCDS DB by Nucleotide ID:ENST00000484178Re-query CCDS DB by Protein ID:ENSP00000419388
Original member Current member EBI ENST00000498107.5 ENSP00000419541.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000498107.5Link to Ensembl Protein Viewer:ENSP00000419541.1Re-query CCDS DB by Nucleotide ID:ENST00000498107Re-query CCDS DB by Protein ID:ENSP00000419541
Original member Current member EBI ENST00000481508.1 ENSP00000419665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481508.1Link to Ensembl Protein Viewer:ENSP00000419665.1Re-query CCDS DB by Nucleotide ID:ENST00000481508Re-query CCDS DB by Protein ID:ENSP00000419665
Original member Current member EBI ENST00000465582.5 ENSP00000420485.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465582.5Link to Ensembl Protein Viewer:ENSP00000420485.1Re-query CCDS DB by Nucleotide ID:ENST00000465582Re-query CCDS DB by Protein ID:ENSP00000420485
Original member Current member EBI ENST00000612337.4 ENSP00000480488.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612337.4Link to Ensembl Protein Viewer:ENSP00000480488.1Re-query CCDS DB by Nucleotide ID:ENST00000612337Re-query CCDS DB by Protein ID:ENSP00000480488
Original member Current member NCBI NM_001256510.1 NP_001243439.1 Accepted alive Link to Nucleotide Sequence:NM_001256510.1Link to Protein Sequence:NP_001243439.1Re-query CCDS DB by Nucleotide ID:NM_001256510Re-query CCDS DB by Protein ID:NP_001243439Link to BLAST:NP_001243439.1
Original member Current member NCBI NM_001256511.1 NP_001243440.1 Accepted alive Link to Nucleotide Sequence:NM_001256511.1Link to Protein Sequence:NP_001243440.1Re-query CCDS DB by Nucleotide ID:NM_001256511Re-query CCDS DB by Protein ID:NP_001243440Link to BLAST:NP_001243440.1
Original member Current member NCBI NM_001256512.1 NP_001243441.1 Accepted alive Link to Nucleotide Sequence:NM_001256512.1Link to Protein Sequence:NP_001243441.1Re-query CCDS DB by Nucleotide ID:NM_001256512Re-query CCDS DB by Protein ID:NP_001243441Link to BLAST:NP_001243441.1
Original member Current member NCBI NM_001256513.1 NP_001243442.1 Accepted alive Link to Nucleotide Sequence:NM_001256513.1Link to Protein Sequence:NP_001243442.1Re-query CCDS DB by Nucleotide ID:NM_001256513Re-query CCDS DB by Protein ID:NP_001243442Link to BLAST:NP_001243442.1
Original member Current member NCBI NM_003143.3 NP_003134.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003143.3Link to Protein Sequence:NP_003134.1Re-query CCDS DB by Nucleotide ID:NM_003143Re-query CCDS DB by Protein ID:NP_003134Link to BLAST:NP_003134.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243439.1 148 Q04837 148 100% 0 0
NP_001243440.1 148 Q04837 148 100% 0 0
NP_001243441.1 148 Q04837 148 100% 0 0
NP_001243442.1 148 Q04837 148 100% 0 0
NP_003134.1 148 Q04837 148 100% 0 0

Chromosomal Locations for CCDS 5866.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141739167 141739190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141742169 141742229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141743561 141743701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141743902 141743989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141745496 141745584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141750311 141750354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGTTTCGAAGACCTGTATTACAGGTACTTCGTCAGTTTGTAAGACATGAGTCCGAAACAACTACCAGTT
TGGTTCTTGAAAGATCCCTGAATCGTGTGCACTTACTTGGGCGAGTGGGTCAGGACCCTGTCTTGAGACA
GGTGGAAGGAAAAAATCCAGTCACAATATTTTCTCTAGCAACTAATGAGATGTGGCGATCAGGGGATAGT
GAAGTTTACCAACTGGGTGATGTCAGTCAAAAGACAACATGGCACAGAATATCAGTATTCCGGCCAGGCC
TCAGAGACGTGGCATATCAATATGTGAAAAAGGGGTCTCGAATTTATTTGGAAGGGAAAATAGACTATGG
TGAATACATGGATAAAAATAATGTGAGGCGACAAGCAACAACAATCATAGCTGATAATATTATATTTCTG
AGTGACCAGACGAAAGAGAAGGAGTAG

Translation (148 aa):
MFRRPVLQVLRQFVRHESETTTSLVLERSLNRVHLLGRVGQDPVLRQVEGKNPVTIFSLATNEMWRSGDS
EVYQLGDVSQKTTWHRISVFRPGLRDVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL
SDQTKEKE


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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