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Report for CCDS46809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46809.1 Public Homo sapiens 3 TOPAZ1 24 110 108 CCDS HistoryNCBI Gene:375337Re-query CCDS DB by CCDS ID:46809.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309765.4 ENSP00000310303.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309765.4Link to Ensembl Protein Viewer:ENSP00000310303.4Re-query CCDS DB by Nucleotide ID:ENST00000309765Re-query CCDS DB by Protein ID:ENSP00000310303
Original member Current member NCBI NM_001145030.2 NP_001138502.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145030.2Link to Protein Sequence:NP_001138502.1Re-query CCDS DB by Nucleotide ID:NM_001145030Re-query CCDS DB by Protein ID:NP_001138502Link to BLAST:NP_001138502.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138502.1 1692 Q8N9V7 1692 100% 0 0

Chromosomal Locations for CCDS 46809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 44242054 44242399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44242853 44245271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44254968 44255029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44256151 44256278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44262419 44262483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44266997 44267136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44269216 44269301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44270685 44270810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44281968 44282031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44287389 44287540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44287747 44287839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44290771 44290886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44304015 44304081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44305147 44305321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44306326 44306426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44309825 44309990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44321027 44321191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44323092 44323295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44328250 44328433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 44331792 44332011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5079 nt):
ATGCGACGACCTCCACCCCTGGGCCCCACGACGGCCTCAGGGCCTGAAGGCAATGTGCGAAACCTGCAGA
AGCGGCAGGCGCCAGGGCCAGGCGCGGCGGGAGGCTGTGGCCCTGAGGCCGGGGGGTGCCGGGAAAATAA
GCAAAAGAGGAGAATGGTGGCCCGGGCCACCCCTGGGAGAGGCGAGGTGGAAAGTGATAAGTCGGTTGCA
GCATCAGGGGCTGGAAAGGCCGCAAGGCGTCAGGTGGAGGGGCGCAGGGGCCCGGTGAGCCCGTCAGACT
CGTCAGACCCGCGAGGCCTAGAAGCAGCAAAGGAGGCTGAACTCCCCTTGCAAACGGAAAGACACACCAA
GGAAAAAAGAAAAGTTACTGAAGCCTCAAGTGATGATCCACAGCCAGGGCTTGACTTGGTAAGAAAGGAA
TCATTAACCAGTTCGGAATCTTTCCAAACAGTGGAATGCTTGCAGTCTTTGGGTAAGGAAAGTATAATAG
AAGGTATTAAAAGAAGAATTCGAAATAAAAAACTTAAAAGCTTAGAAAACCCACCTCTCAAAATAACCGA
AAATGAGGCTACACAAAATATTAAGGTTGAATTCCAAGATGAACTGTACAAGAATACTCCAAAATATTCT
TGTAATATCTTGTCACCTGAAGTAGAAAATAATTCCGTTTTAAAATTACGTGATTGCAATTGTTTCCCCC
ATTCCAAGGGTTGTAATGATGAAAACAACCTGCCATATAAACCTGATGGTGGATGTATGCATGTAGCAGA
AAATTTCTCAAAGAAAGAAAACCTTAGGAGTCTTGCAGAGAAGAGTGACACAAATAGTATTCCTCAGCTC
TTACAAACAGAAGAAAATGTAATGGGAGTAAATAAGTTACTACCAGAAGAGAGTGATTTATACCAAAGTA
AAACCAATGGCTTGCTTTCCTGCCTTCAACATGAAAAAAATAAATATTCAATAGAGGAGAGCAGTGTTGG
GCGAAAACCCAGGAAAAGGATGAAGTTGTCTGAAAAAGCAGATGAAACAGTTACTGAGATGAACTTCTCT
AATGAGTATAACAAGTCTGAGTTGATGTTGCAAGAAAATCAAATGATTGCTGATGGTAAAGAAGCAGAGA
CTAAAAGTCCTTTAAATGTTTTGAGAAAAGTAAGCCATAATACAGTCTCTTTGATGGATCATTTATTAAG
TGTCCCAGAAACAGTAGAAAAAGAAACAAGTTCTGAACATCATGTAAATGCTGTGTTTCAGAAAACCATT
GAACCACTTTTGAAAGAAGAAACAGAGAATGCTTCAGAGCCGTTAGGTTATGAAAGCATGGCATCGAAAG
AGGATTTTAAATCGATGAAAAGCTTCATAGGGAAATCACCTAATGAGTACCATATTGAAAGGAGATCTTC
ACGGGAAGACTTAAGAAGTGCATCTGAAGAATTGAAGTTAAGCTGTCAGAGAACAATACCTATGACTGGT
AAAAGAACTTGGCCCTATTATTCATGTGCTAGAATATCTGCCTGGTGTTGGAAAAAGGCTTCCTTGCCAG
AATCAAGTTACTTTCTTCGTGGGTCTCAGGAAAGTTGTAGGCAAGTTGATGTCCCTAAACACCAAACAAA
CCAGACCCATTTAACTGACTCCAAATTATTATTACAAAGTTCCTTAACAGAAACAAACACTGAATCTTCA
AGTAAAGAAAAATTAGATTCTAATTCTAATTGTTTGTCTTCAGTTTCTGCAGTAGAACCTACTTTAATGG
TTATAAAGGAACCTATAATCAAGGATGATAAAAAGATAAAATCAGAGGAACTGAGCAGAAGAGGGTCAGA
GGTAATTTCTAACACTACTGAAGATACTCAATTAACCAGTGAGACTCAAAGCTTAACGGGAAATAAAAAA
AAAGCTAGAGGAAATTTAACGAAACTTAATTTGACAGCGACTTCCAAAGATGGTCAGGAAGCAAATAACT
CTGCAGGCAAAACTATTCATCGAAAAGCATGCATTGCTCAACAAACATTTATAGTTCCAGACTTGGTTAA
AATATTGAACACAGGACGGCTGACTAATTTTAAAATTCCTTTACTTAAGAATAAATCAGAAAAAAGAAAA
GAAGTAAATGCCAAGTCATCAGAGAGAGAAGCTTACAGTCCTCTAGAACTTCTGGACAATTTATCTGGAG
CAGACGTAAGACAGAACAGGAGTAAAGAAAATGTCTCCATGATGATGTTAGGACCTCAAACTTTGAGCAT
ACGAAATAGTGTAACTCCAGTGCAAGCTAGTTCTGACTCATTCTACAATAAGAAATCCTATAGTATTTCT
CCAAGCTTTACAAAGCAAGGTAACAATAGCAAACCATCTAATCACGTCTCTGAACCAGGCAATATTGTTT
CTAATAAAGAAGTTGCTTCTCTCACAGTTGAAAATAATGCTTTTTCTTGTGATCCTGGGTATGTAGAGAA
AAGTCCTTCCTTCTGCTGTAATGAACAAGAAACATTCCGACCAGTGTCCAGTGAAGTTAGGGGTAGAAAA
ATAACTAAGAATTTTTCAGAGGTAGGGTTTCCAGATATTCTTAAAGCATATGAAGATGACGTCCTCTTAA
TTGATGTAATTCAAGATGACCCAGACCTCTTTGGAGTCTCCAATGAAGGGGAGCTCTCATTTACTTCTGA
GGTCCCAAAGATAAGCCAGGAGCCCAATGTTGCTGGAGAGCACCAATCAACAGACTCCAAGTACATGGAA
ACTCCAGTAAAAAAAGAACCAAGTGATGACTTAAGAGAACTTCCTGTACTGGACTGTGGATGGATAAAGC
CAGACATCTGTGCTTCCAACTCAGCAGAAAGTGAAATAAAACGTGATCCCAAAGATGTAAACACTTCCTT
AGGAGAAGTTGCTAATGAGACCTCTGAAAATGAAACACTGGGAGACTTCAGTGAACAAATAAAAGGTTCA
GACTTGGATGAAAAGCATAGATTTACAGACAAAGTGATTACCAAAGAAGAAAAAGAAAATATTTATGAAG
TTTGCAAAAGCAAAGATTCTAGAAATGCAGACTTTATGGTCGGCGAATGTCAATTTGCAGTACCAGTCCC
GAAACCTCTGTGTTTATTAGTACCTCCTTTGAATCTAAGTGGTCGTCAAGAAGACACAATACTGAATACC
TGGATGAATGATTTCAGATTTCTGGGAAAACATTCTGTCCTAAAGCTGCAGAATCCTGAAACTTGTGAAA
TATTCAAGAGGGAAAAAAATGTGGGGGTGTTCCAGAAGTCCCTAGGGTTGATGATACCCTATAAATATTG
CAAATTTCATTTTAATACATTACGTGGCTGTGAGCGACCACTGTGCAAGTTTGCTCATGTGCCTGAACAA
GGGGATGAAAAGGTTTGCATGGATGTGTTTAAGAAATATATAAATATCAATGAACTGTGTTTGCTACAGC
GTGCAGTAAACATATTTATGGAGTACTACAGAAAGTTTCCCCCAGGTGTATACTTTGATTTACAAGTGCT
AAATGACCTTCTAAATTCTTTACTCAAACATTGTTTGTTGAAAGAAGTATTTCAGATAGTGAACCTCAGC
ATAATGGTTAAAATGCTGCCTTCTCTGAAAATATTACTAAACATATTTGAGTATGTGGCAACTATGAAAT
TAAGGAATGCTGTACCTGCTTTAATTGATATCTTTTGCAAGCTTGTTGAAGCCGGGATGGTGCTTGACCC
AGAGCACTTTAACTATATTGTTAAGCTTTTATACCAAGTACAAGCTTCCAAACAAGAAATAACTGCAGTT
CTGGAAATGAAATCGAGGTTACAGATGAGACGATTTAAAAAGAACTGGAAGTGTGATTTAGATTCAGCCT
TGAATAAATTAGAGCATTGTAAAGAAAAAGGTGACTGGACCAAATTGGGAAAATTATACATTAACGTAAA
AATGGGCTGTGAAAAATTTGCAGATTTCCAGACATTTTGTGCTTGCATTGCTGAAACACTCACAAAAAAC
TATGAAGATGAAAGACCAGATATTCCCTTTTGTGAATTTGCTGAAACAGTTAGCAAAGATCCACAAAACA
GTAAAGTAGATAAAGGTGTACTGGGAAGAATTGGAATCAGTGCTATGTACTTCTATCACAAGCTGTTGCA
GTGGTCCAAGGGAAGGAAGGTCTTAGAGAAACTATATGAATTAAAAATACACTTTACAAGTTTAAAAGGA
CTTATAGGGCCTGAGAAGTTAGCATCAAGATGTCAAATTGTGAATGTTGCAGCAGAAATTTTTCTAAAAA
GTGGAAGCCTAGATGGTGCCATTTGGGTAATGAGGGAGTCAGAGTGGATAATCAATACGCCTCTGTGGCC
TTGTGATAGACTGGATGTGCTTAATCGACATAATTTACTCTGTACAATTGCACATGAAATCTTAGCCAAG
AGCCTTTATAGACAGACATTTGAAGTTTTGCAGAATCTACCAGGTTTTCAAAATTCCCAAGAAACTGTGG
AAGTCTCACAATATAGCCTTCTTTTTAATAAGCTTCTAGGTTCCTGTATAGAAAGCAGTAGTCTTGGTAT
GTCATCCTCTGTGGCAGAATTCATGATTTCAAAGAGCATCCCTATTGATTTTTCCTTTCTCAGAAGATTA
ATTACTTCTTTAGGAAGGAGTCGTTTATGGCTCAAAGCCAGAGCCCACTACAAAAGTGCTCTTTCCTTGG
GTTGCTACCCACCATTGGAAGGAAATTTATACCGAAAACTTCTTCTAATTCCATCTTATTTATCTGAGAT
TGAAATGCTCTTAGCTATTGAAATCTTCATGGTATCTAATGCTAGTAGTATTCAGAGTCCTGGAACTTCT
ACACAGATACTGCAGATAGTTTTGAAAAGGTGTGAAGACAACCAGTCTCGGAGCAATGATGATTATCAAG
CTGCAGTAGAAAGGTTAATTATGGCTGCTCGTATATCAGATCCAAAGCTTTTCGTTAAACACATGACTGT
CAATGTTAATAAGGAACAGGTTTATAGTTTGGAACATTGTTCTGCCCTGAAATGGTTAAAAGAGAATATG
AAGTGGGCTGGAAAGGTTTGGCTTTTCAGTAACCATTAG

Translation (1692 aa):
MRRPPPLGPTTASGPEGNVRNLQKRQAPGPGAAGGCGPEAGGCRENKQKRRMVARATPGRGEVESDKSVA
ASGAGKAARRQVEGRRGPVSPSDSSDPRGLEAAKEAELPLQTERHTKEKRKVTEASSDDPQPGLDLVRKE
SLTSSESFQTVECLQSLGKESIIEGIKRRIRNKKLKSLENPPLKITENEATQNIKVEFQDELYKNTPKYS
CNILSPEVENNSVLKLRDCNCFPHSKGCNDENNLPYKPDGGCMHVAENFSKKENLRSLAEKSDTNSIPQL
LQTEENVMGVNKLLPEESDLYQSKTNGLLSCLQHEKNKYSIEESSVGRKPRKRMKLSEKADETVTEMNFS
NEYNKSELMLQENQMIADGKEAETKSPLNVLRKVSHNTVSLMDHLLSVPETVEKETSSEHHVNAVFQKTI
EPLLKEETENASEPLGYESMASKEDFKSMKSFIGKSPNEYHIERRSSREDLRSASEELKLSCQRTIPMTG
KRTWPYYSCARISAWCWKKASLPESSYFLRGSQESCRQVDVPKHQTNQTHLTDSKLLLQSSLTETNTESS
SKEKLDSNSNCLSSVSAVEPTLMVIKEPIIKDDKKIKSEELSRRGSEVISNTTEDTQLTSETQSLTGNKK
KARGNLTKLNLTATSKDGQEANNSAGKTIHRKACIAQQTFIVPDLVKILNTGRLTNFKIPLLKNKSEKRK
EVNAKSSEREAYSPLELLDNLSGADVRQNRSKENVSMMMLGPQTLSIRNSVTPVQASSDSFYNKKSYSIS
PSFTKQGNNSKPSNHVSEPGNIVSNKEVASLTVENNAFSCDPGYVEKSPSFCCNEQETFRPVSSEVRGRK
ITKNFSEVGFPDILKAYEDDVLLIDVIQDDPDLFGVSNEGELSFTSEVPKISQEPNVAGEHQSTDSKYME
TPVKKEPSDDLRELPVLDCGWIKPDICASNSAESEIKRDPKDVNTSLGEVANETSENETLGDFSEQIKGS
DLDEKHRFTDKVITKEEKENIYEVCKSKDSRNADFMVGECQFAVPVPKPLCLLVPPLNLSGRQEDTILNT
WMNDFRFLGKHSVLKLQNPETCEIFKREKNVGVFQKSLGLMIPYKYCKFHFNTLRGCERPLCKFAHVPEQ
GDEKVCMDVFKKYININELCLLQRAVNIFMEYYRKFPPGVYFDLQVLNDLLNSLLKHCLLKEVFQIVNLS
IMVKMLPSLKILLNIFEYVATMKLRNAVPALIDIFCKLVEAGMVLDPEHFNYIVKLLYQVQASKQEITAV
LEMKSRLQMRRFKKNWKCDLDSALNKLEHCKEKGDWTKLGKLYINVKMGCEKFADFQTFCACIAETLTKN
YEDERPDIPFCEFAETVSKDPQNSKVDKGVLGRIGISAMYFYHKLLQWSKGRKVLEKLYELKIHFTSLKG
LIGPEKLASRCQIVNVAAEIFLKSGSLDGAIWVMRESEWIINTPLWPCDRLDVLNRHNLLCTIAHEILAK
SLYRQTFEVLQNLPGFQNSQETVEVSQYSLLFNKLLGSCIESSSLGMSSSVAEFMISKSIPIDFSFLRRL
ITSLGRSRLWLKARAHYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFMVSNASSIQSPGTS
TQILQIVLKRCEDNQSRSNDDYQAAVERLIMAARISDPKLFVKHMTVNVNKEQVYSLEHCSALKWLKENM
KWAGKVWLFSNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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