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Report for CCDS24559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24559.1 Public Mus musculus 11 Ccnjl 23 108 98 CCDS HistoryNCBI Gene:380694Re-query CCDS DB by CCDS ID:24559.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24559.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050574.6 ENSMUSP00000058111.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050574.6Link to Ensembl Protein Viewer:ENSMUSP00000058111.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000050574Re-query CCDS DB by Protein ID:ENSMUSP00000058111
Original member Current member NCBI NM_001045530.2 NP_001038995.1 Accepted alive Link to Nucleotide Sequence:NM_001045530.2Link to Protein Sequence:NP_001038995.1Re-query CCDS DB by Nucleotide ID:NM_001045530Re-query CCDS DB by Protein ID:NP_001038995Link to BLAST:NP_001038995.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038995.1 387 Q5SRT8 387 100% 0 0

Chromosomal Locations for CCDS 24559.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 43529397 43529459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43556555 43556768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43579684 43579986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43583180 43583339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43585292 43585715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGATGAGCCGTGGTGGGAAGGGCGCGTCGCCTCGGACGTACACTGCACTCTGCGCGAGAAGGAACTGA
AGCTGCCCACCTTCCGTGCCCACTCCCCGCTCCTGAAGAGCCGTCGATTCTTTGTAGACATTCTGACCCT
GCTGAGCAGACACTGCCATCTCTGCCCCTCGGCCCGGCACCTGGCCATCTACCTTCTGGACCACTTCATG
GACCAGTACAACATCACCACCTCCAAGCAGCTGTATACTGTGGCTGTCTCCTGCCTCCTGCTGGCAAGTA
AGTTTGAAGACAGGGAAGACCGCGTGCCTAAATTGGAGCAGATAAACAATACAAGGATCCTGAGCAGCCA
AAACTTCTCCCTCACCAAGAAGGAGCTGCTGACCACAGAACTTCTGCTCCTGGAGGCTTTCAGCTGGGAC
CTTTGCCTGCCCACGCCCGCCCACTTTCTGGACTACTACCTCTTGGCCTCCATCAGCCAGAAGGACCACC
ACTGCCACGCCTGGCCCACCACCTGCCTCCGAAAGACCAAAGAGTGCCTCAAGGAGTATGCTCACTACTT
CCTAGAAGTTACCCTGCAAGATCATATATTTTACAAATTCCAGCCTTCCGTGGTTGCTGCAGCCTGTGTT
GGGGCCTCCAGGATCTGCCTTCAGCTGTCTCCCTACTGGACCAGAGACTTGCAGAGGGTCTCGAGCTACT
CCCTAGAGCATCTCAGCACGTGTATCGAAATCCTGCTGGTAGCCTATGACAATGTCCTCAAGGATGCCGT
TGCAGTCAAGAGCCAGACGCTGGCCATGGTGCCGGGCTCATCATCAGCTCCCGCCCAAGTGCTGTTCCAA
CCGCCCACCTACCCGACTCTCAGCCAGCCACCGCCAACAACTCTAGCCCAGTTCCAGAGTCCAGCGCAGG
ACTTGTGCTTGGCATATCGGGACTCGTTGCAGGCCCACCGTTCAGGGGGCCTGCTCTCAGGAGACACTGG
TCCATCCCTCCACACGCCATACCCAACCCTCCAGCCCTTGGATATGTGTCCTGTGCCCGTCCCTGCATCC
CTTAGCATGCAGATGGCCATAGCAGCTGAACCCAGGCACTGCCTTACGGCCTCCTACGGAAGCAGCTACT
TCAGCGGCAGCCATATGTTCCCTGCAGGCTGTTTCGACAGCTAG

Translation (387 aa):
MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSRHCHLCPSARHLAIYLLDHFM
DQYNITTSKQLYTVAVSCLLLASKFEDREDRVPKLEQINNTRILSSQNFSLTKKELLTTELLLLEAFSWD
LCLPTPAHFLDYYLLASISQKDHHCHAWPTTCLRKTKECLKEYAHYFLEVTLQDHIFYKFQPSVVAAACV
GASRICLQLSPYWTRDLQRVSSYSLEHLSTCIEILLVAYDNVLKDAVAVKSQTLAMVPGSSSAPAQVLFQ
PPTYPTLSQPPPTTLAQFQSPAQDLCLAYRDSLQAHRSGGLLSGDTGPSLHTPYPTLQPLDMCPVPVPAS
LSMQMAIAAEPRHCLTASYGSSYFSGSHMFPAGCFDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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