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Report for CCDS49180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49180.1 Public Mus musculus 12 Lbhd2 23 108 98 CCDS HistoryNCBI Gene:380787Re-query CCDS DB by CCDS ID:49180.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150384.2 ENSMUSP00000128648.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150384.2Link to Ensembl Protein Viewer:ENSMUSP00000128648.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150384Re-query CCDS DB by Protein ID:ENSMUSP00000128648
Original member Current member NCBI NM_001101503.2 NP_001094973.1 Accepted alive Link to Nucleotide Sequence:NM_001101503.2Link to Protein Sequence:NP_001094973.1Re-query CCDS DB by Nucleotide ID:NM_001101503Re-query CCDS DB by Protein ID:NP_001094973Link to BLAST:NP_001094973.1
Original member Current member NCBI NM_001358956.1 NP_001345885.1 Accepted alive Link to Nucleotide Sequence:NM_001358956.1Link to Protein Sequence:NP_001345885.1Re-query CCDS DB by Nucleotide ID:NM_001358956Re-query CCDS DB by Protein ID:NP_001345885Link to BLAST:NP_001345885.1

Chromosomal Locations for CCDS 49180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 111408546 111408611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111410187 111410343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 111411724 111411845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGAGCACCCCACAGCCAGCAGCACCAGAGAGCCCCACTGAGGGCCCCAGAGGCCCAGCAGGGAAGGCTG
CGGTAGGTGTCCGGGAGAAGGGCCCTTGGCTCTGTCAGCGACTGCCCTCTATTGTGGTGGAACCCACTGA
AGCGGGTGCTGTGGAAAGCGGGGAGCTGCGTTGGCCACCTGAGGGTACACAGAGAGGTACCCCTCAGATC
CAGGCTGCTGCTGCTCCTTCCCCAAGTCCACCAGGGAAGGAAGCAGATGATGATGTCATCCAGGGTGCCA
GCTCCGGGCACCAGGCATTCCCTGCTCCAGTAACAGATGCGGGTGTGGCAGGCTCTACTCTCTGA

Translation (114 aa):
MSTPQPAAPESPTEGPRGPAGKAAVGVREKGPWLCQRLPSIVVEPTEAGAVESGELRWPPEGTQRGTPQI
QAAAAPSPSPPGKEADDDVIQGASSGHQAFPAPVTDAGVAGSTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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