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Report for CCDS57888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57888.1 Public Mus musculus Y Gm20736 23 108 98 CCDS HistoryNCBI Gene:380994Re-query CCDS DB by CCDS ID:57888.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178198.1 ENSMUSP00000136973.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178198.1Link to Ensembl Protein Viewer:ENSMUSP00000136973.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178198Re-query CCDS DB by Protein ID:ENSMUSP00000136973
Original member Current member EBI ENSMUST00000190282.6 ENSMUSP00000139870.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190282.6Link to Ensembl Protein Viewer:ENSMUSP00000139870.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190282Re-query CCDS DB by Protein ID:ENSMUSP00000139870
Original member Current member NCBI NM_001037748.1 NP_001032837.2 Accepted alive Link to Nucleotide Sequence:NM_001037748.1Link to Protein Sequence:NP_001032837.2Re-query CCDS DB by Nucleotide ID:NM_001037748Re-query CCDS DB by Protein ID:NP_001032837Link to BLAST:NP_001032837.2

Chromosomal Locations for CCDS 57888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 65379124 65379241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 65384570 65384636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 65385316 65385350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 65400194 65400311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 65401092 65401191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 65403234 65403332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 65403692 65403721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (567 nt):
ATGAGAAGAATGGCTCTTAAGAAATTGAAGGTGATACCAAAGGAAGGTTACTTATTACTTTTGGACTTTG
ATGATGAGGACGATGACATAAAAGTTTCAGAGGAGGCTCTTTCGGAAGTAAAGAGCCCAGCATTTGATAA
AAATGAGAATATATCGCCTCAAGCAGAAGCAGATGAAGATATGGGAGATGAAGTAGACAGTATGTTGGAT
AAATCTGAAGATGACATTTATAAGACGCTTCACATAAAGAGAAAATGGATGGAAACTTATGTCAAAGAAT
CTTTCAAATGCAGCAACCAGAAATTAGAAAGATTTTGCAAAACGAACGAACGAGAGAGGAAGAACATCAA
CAACAAATTTTGTGAGCAGTATATAACTACATTTCAGAAGTCTGATATGGATGTACAGAAATTCAATGAA
GAAAAAGAAAAATCAGTGAATAGTTGTCAAAAAGAACAACAAGCATTGAAACTGTCCAAATGTAGTCAGA
ACCAGACCCTGGAAGCAGTTAAAGAAATGCATGAGAAGTCCATGGAGGTTTTGATGAACTTGGGGACCAA
GAACTAA

Translation (188 aa):
MRRMALKKLKVIPKEGYLLLLDFDDEDDDIKVSEEALSEVKSPAFDKNENISPQAEADEDMGDEVDSMLD
KSEDDIYKTLHIKRKWMETYVKESFKCSNQKLERFCKTNERERKNINNKFCEQYITTFQKSDMDVQKFNE
EKEKSVNSCQKEQQALKLSKCSQNQTLEAVKEMHEKSMEVLMNLGTKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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