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Report for CCDS48467.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48467.1 Public Mus musculus 1 Stum 23 108 98 CCDS HistoryNCBI Gene:381310Re-query CCDS DB by CCDS ID:48467.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48467.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000136521.1 ENSMUSP00000119782.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000136521.1Link to Ensembl Protein Viewer:ENSMUSP00000119782.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000136521Re-query CCDS DB by Protein ID:ENSMUSP00000119782
Original member Current member NCBI NM_001081227.2 NP_001074696.1 Accepted alive Link to Nucleotide Sequence:NM_001081227.2Link to Protein Sequence:NP_001074696.1Re-query CCDS DB by Nucleotide ID:NM_001081227Re-query CCDS DB by Protein ID:NP_001074696Link to BLAST:NP_001074696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074696.1 141 Q0VBF8 141 100% 0 0

Chromosomal Locations for CCDS 48467.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 180438329 180438363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180439106 180439114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180442544 180442723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 180483128 180483329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGAGCCTTTGCACAAAGACGCCGAGACCGCGGCGGCGGCGGCGGCTGTGGCAGCGGCAGATCCCCGGG
GGGCATCGTCGTCCAGCGGGGTGGTCGTGCAGGTTCGCGAGAAGAAGGGGCCCCTGCGCGCCGCCATCCC
CTACATGCCCTTCCCGGTGGCTGTCATCTGTCTCTTCCTCAACACTTTCGTGCCGGGATTGGGTACATTC
GTCTCGGCATTCACTGTGCTGTGTGGGGCACGCACCGACCTCCCGGACAGGCACGTGTGCTGCGTCTTCT
GGCTGAATATCGCTGCGGCCCTCATTCAGGTGCTCACGGCCATCGTTATGGTGGGCTGGATCATGAGCAT
CTTCTGGGGCATGGACATGGTCATCCTTGCCATCTCCCAAGGGTACAAGGATCAGGGTATCCCACAACAG
CTGTGA

Translation (141 aa):
MEPLHKDAETAAAAAAVAAADPRGASSSSGVVVQVREKKGPLRAAIPYMPFPVAVICLFLNTFVPGLGTF
VSAFTVLCGARTDLPDRHVCCVFWLNIAAALIQVLTAIVMVGWIMSIFWGMDMVILAISQGYKDQGIPQQ
L


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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