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Report for CCDS17871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17871.1 Public Mus musculus 3 Stpg2 23 108 98 CCDS HistoryNCBI Gene:381476Re-query CCDS DB by CCDS ID:17871.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062306.6 ENSMUSP00000051539.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062306.6Link to Ensembl Protein Viewer:ENSMUSP00000051539.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062306Re-query CCDS DB by Protein ID:ENSMUSP00000051539
Original member NCBI NM_198659.2 NP_941061.1 Updated not alive Link to Nucleotide Sequence:NM_198659.2Link to Protein Sequence:NP_941061.1Re-query CCDS DB by Nucleotide ID:NM_198659Re-query CCDS DB by Protein ID:NP_941061
Current member NCBI NM_198659.3 NP_941061.1 Accepted alive Link to Nucleotide Sequence:NM_198659.3Link to Protein Sequence:NP_941061.1Re-query CCDS DB by Nucleotide ID:NM_198659Re-query CCDS DB by Protein ID:NP_941061Link to BLAST:NP_941061.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941061.1 561 Q8C8J0 561 100% 0 0

Chromosomal Locations for CCDS 17871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 139205899 139206007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139212252 139212364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139215258 139215386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139218189 139218353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139232198 139232310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139243074 139243185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139298405 139298512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139306144 139306300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139309082 139309242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139317392 139317481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139419705 139419864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139522858 139522976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139701625 139701773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 139709173 139709173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGTATGACCGTGCTCCGCGCTGGCTCGACTGTGCCAACCGCGGCAGCACCGAGGAGCACGTGGGGCCTG
GGACCTACCAGGTACCTTTTCCTAAGCAGCAGGCCACAGGTTGCTATGCACCATTTCTTTCTTTGAGTTC
CAAAACAAGTGCTTGTGTTGTCTCCTCTGATGCTGGCCAAGCTGTTCCAGGTCCAGCACACTACAACGTA
TCACAAGCACAGTATAATATAAGAGGAGGCCGCAGTCTGCAAAACCGAGAGAAGCGATTTAAGAAACTTA
TTTCGGATGGTCCAGGACCTGGGAGCTACAATTGGCCTTATCTTGGGACATTATGTATCACAACCAGACA
GAAAACTCCTAGAACTCCTGCAGTTTCCAGAAACATTGATATTCCTTCAATCCCCTCTTCCGGAAAGTCA
CATGGGTATCATCTCAATGACGATGACACTATTATGAGACGCACCCCACCTCCTAGTGACAACACAATAG
GTCCAGCGTACTACAATCCTCAGTTTGATTATCCTAAAGCATCTTTGAAATATAAAGGCGTAAATTTTGG
CAATGCTACAGGAAGACAAGAATTTCTCAAGTATTCGGGTCCTGGTCCTGGACAGTATGATATCATCCAG
AAAAGGAAACTACATTGTGAAAATATTAACATCAAGAGAGAACAAGAGCATAATTATTATACATATGTCC
CACGGCTATATGAAGCGATAATATTGCAGGAGGAAAAAAAGGGTGTACCAGGACCTGGAAAGTACAACAT
TAAAAGTGAATTTGACATGATAAAATCCATGTCAGCACTTGTGAATTCTCCATCTTTTATTTTCTTTTCT
GAAACAGAGAGATTTGAACCTATAAAATCATGCACCCCAGCTCCTGGCACATACAATGAAATACGAACTG
CTTTCAAGTGCCCAAAGAAAAGATTTGGACTGTCTTTGCCATTTAACCAGAGTGCTGCTCGATTCACAGA
AGATTCCAAGGCACAGAAGCTACCAGGTCCTGGCTTTTATGATATCTCAACCAACATTGTAAAAGCCCAG
GTTAAAAAACCCTGCTTGAAGAAACAACCGAAAACTGGATTTGGTTCTTCTGTGCCTCGAACTTTGTTCA
CAGCTCAGAAAAAAGCTTTCCGTGGTCCTGGGCCTAGTGATTATCAGGTTCGAGGAACTCATGATGAATT
ACCTAACTTGAACAAATCTGCTGCTTTCTTGTCGAGAGCAGAAAAAACTCCACCAGTACGAAAAATGCGT
CTTCCAGCTCCTGGCCGCTATGATGTTCAGAAATCGTATGACATGTCCCAAGTTAAACATAAGTACATGC
CACCTCGTACTTCGGTGGCTAAAAAAAGGCATTCCTCTTTCCTGAGCGCAGCTCCTCGGTGCCTGGGAAA
AATCGCTGATGGGCCAGGACCTGCAACATACAGTCCTGTTTTAATGAAGTCTGGTGCCATAATCTCATTC
GTTAAAGGACCAAAGCGTTTTCAAGAGTTTCATGGCGAGTTTTCTCCAGGCCCTACGACATATGAGCTCA
GTCCATTTCTAAGACATTCTCTTCTGAAGAGAACATACAATGTCACTCTGCCGTGTTCATCCTCTCCTAA
TAGAGAAAATACTGGTTGTCCATCACAAAAAGCCACACAAAAATTTCAAAGAGAGAAATTACAGTATTTT
AACTGA

Translation (561 aa):
MYDRAPRWLDCANRGSTEEHVGPGTYQVPFPKQQATGCYAPFLSLSSKTSACVVSSDAGQAVPGPAHYNV
SQAQYNIRGGRSLQNREKRFKKLISDGPGPGSYNWPYLGTLCITTRQKTPRTPAVSRNIDIPSIPSSGKS
HGYHLNDDDTIMRRTPPPSDNTIGPAYYNPQFDYPKASLKYKGVNFGNATGRQEFLKYSGPGPGQYDIIQ
KRKLHCENINIKREQEHNYYTYVPRLYEAIILQEEKKGVPGPGKYNIKSEFDMIKSMSALVNSPSFIFFS
ETERFEPIKSCTPAPGTYNEIRTAFKCPKKRFGLSLPFNQSAARFTEDSKAQKLPGPGFYDISTNIVKAQ
VKKPCLKKQPKTGFGSSVPRTLFTAQKKAFRGPGPSDYQVRGTHDELPNLNKSAAFLSRAEKTPPVRKMR
LPAPGRYDVQKSYDMSQVKHKYMPPRTSVAKKRHSSFLSAAPRCLGKIADGPGPATYSPVLMKSGAIISF
VKGPKRFQEFHGEFSPGPTTYELSPFLRHSLLKRTYNVTLPCSSSPNRENTGCPSQKATQKFQREKLQYF
N


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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