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Report for CCDS57275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57275.1 Public Mus musculus 4 Ccdc180 23 108 98 CCDS HistoryNCBI Gene:381522Re-query CCDS DB by CCDS ID:57275.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57275.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178561.7 ENSMUSP00000136714.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178561.7Link to Ensembl Protein Viewer:ENSMUSP00000136714.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178561Re-query CCDS DB by Protein ID:ENSMUSP00000136714
Original member Current member NCBI NM_198660.2 NP_941062.2 Accepted alive Link to Nucleotide Sequence:NM_198660.2Link to Protein Sequence:NP_941062.2Re-query CCDS DB by Nucleotide ID:NM_198660Re-query CCDS DB by Protein ID:NP_941062Link to BLAST:NP_941062.2

Chromosomal Locations for CCDS 57275.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 45890366 45890387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45890852 45890949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45893216 45893406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45896164 45896252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45898554 45898666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45899957 45900085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45900162 45900272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45900391 45900486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45902422 45902585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45903849 45903968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45904539 45904618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45906009 45906097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45906829 45906951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45909259 45909432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45911286 45911401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45912738 45912864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45914207 45914246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45914369 45914880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45916195 45916412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45917389 45917564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45920844 45921024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45921897 45922043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45923164 45923308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45923482 45923598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45926170 45926268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45927944 45928063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45929539 45929711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45929954 45930006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45930120 45930195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45932455 45932532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45940910 45940976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45941783 45941924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45944338 45944498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45944941 45945078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45946202 45946313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45948750 45948855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45949450 45949585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 45950596 45950751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4995 nt):
ATGCGGGAGCCTCCAGGCTTGGAACGAAGAGGAATTGGGCCAGCAGTCAAGATGTCGCCAGTGGGAAAGG
TGTCCCAAGTACAGAATGGCAAAGTCTACCAGCAGATCTTCCAGGCCCAGGTGCAGCTGGTTCAGTCTCT
GGCAGCTACCAGGAAGCAGGCTGCAGAGCGTTCTGAGACTCAAAAGAATGTCAAGACACCCATGATGAAG
AAGGTGCCATTACCTGAGGGGGAAACTATGACCCCTCGCCAGAGGAAGTGGGTGCGTAGCCTCCCCAACG
ACTGGGTCACGGAAAACCCAGTTCTTTATAGGGAAAAAGAAGAAGCCAGGAAGGAGAAGGAGCGTCTGAC
AGATGACATGATTGCTTCTCAAGAGGTGCAGGGCCTCATGGACAACATAGTTCCACAGCTCACAGAGAGG
GTGAGCAACCTCCAGGAACAAGAGGAATTCAAGAAGAGGAAGTACCTGAGCGCACTGGCGAGCTTTCAGG
AGGAGTTGGAGCAGATTGGGGTGGAGATGGAACCTCTCATCCTGGAGAAAGGGGATCTTCTTTTGAGAAA
GATCTCGAAGTCCGATGAGGACGTTGACATGCTCTTCAAGAAAGTCGAAGGGGAGCCGGACCTCGAAAGC
CACACTATTGAAACCCTGTTGGAACTGTGGGAAAAAGTGGCTGAAAGATTCATGCAGCAGAAGCAGGAGA
TTAAGGAGCTGGACGAGGAGCTGTTGGCCCTGGAGGTCTCTCGAGCCGACAAGCTAAAGGAAGTGCTGAA
GAGATATGTCGGCATCATAGAGAAAACCTCCTATATCCTGCAGCCCGATGTGTATAGGCTGATAGATAAA
GAAGCTATGGCCATGAACCAGGCTCTCCTGGGCAACCGGAGGGCCATCGCCCAGCTGTTAGTCAACCTGA
CTGAGTCAACCCTACAGCAGGAGCTTGACAACCGCCACCGCTGGCAGGGGCTGGTGGATACCTGGAAGGC
TCTCAAGAAGGAGGCCCTGATACAGAGCTTCAGTGAGTTCATGGCTAGCGAGGAGATCCAGGAGCCCCCA
GAAGTGAAGAAGAAGCTTGAAGAAATGCAGAAAAACCAGGAGATGCTTCAGAGTGTGAGGCTCGATCACC
TCTGCACCCTCTGTGACCTCCTCCCCCCTAACTATAACAAAACCCAGTTGACTGAATGGTATGATTCTCT
CACTTCCCTCAACAAGCAGCTCGACACCTACCACATGGACTGCATGTCGCTGGTCCACTTCCTGTATGAG
AAGATTTGGCAGCAGTGCCTGTCCCACGTGCAGGAATGCAAGCAGCAGCTGCTGAACTGGAAAGCTTTCT
CTGAAGCAGAGGCAGAGAGCCTAGTAAATCCAACCTTCTTCCTGATGGTGGGGGAGTTCCAGAGCAAGGT
GGAGAAGCAGCTGGAGCTCCTGGATAACTCCTTTGAGGATTTGGCCAGGGAGACAGAATGGCAGAGCTCG
GACCTCTTCAGGTACTTCCAGGAGGCTGTGAAGCTGTGGGAGGGGCACCAAAGTGTTCTGATGACACAAG
AGCTGGAGCTGGAGAAGAGGATAGAACAGCATCGGCAGAAACACAACCAGGAGAACCAGAACCAGGAGAC
CCTCCTTGATAAGCTTCTCGACCAACTGAGACAGCAAAGCCAAGAGGAGTCGCTGAAAGCCCACATGGAA
AAGGCCAGGACTTTTCTGAAGAACATGAAGTCCAGGTACGAATGTTTTCACCTCTTGCTGACCAAAGAAG
TGATGGAGTACCCGGGGTTAGTGCTGAAAGAACTCAACTGCTATAGCTTCACCCTCAGCCGACACTTCTT
CATTCGTGAAATCTTTGAGCAGAACTTGTCTGGGGAAGTGATTTTTAAATTCAGGCAACCAGAAACCCAC
GAGAAACTCTTCATACAGAAAATAAGGAAAATGAAGAAAAAACAAAGGAAGAGAAAAGGTGAAGAAAGCA
TAGGGCAAGACCTGGGTTCTGAGAAGCCCACAGAAAGCATGAAAGAAGAGGGAAGTGGGGAATCAGAGCC
CAGCACTGCTGGAGAGGCACTGAACCAGGAGAACAAGTCCCCGCAGAGTGACAGGGTGAGTGAGCCCAGA
GACGGGCCTTCCCAAGAAGCTGAAGAGACGCTGGGCGTGAGAGAGACCTCCTCAGAGACATCCCAGGACC
GAGAAAATCTCAAGGTTCAAGAAGAGAAGGAAGAGATAGAAGAAGAGGAGGAAGAGGAGGAGGAAGAGGA
GGAGGAGGAAATAAAAGAGGAGAGAGTAGAGGAGGAAGAGAAGGAAGAAGAAGAAGAGGAGGAGGAGGAA
ATAAAAGAAGATGAGGAGGAAGAAGATGAATATGAGAATGAAGACGTGCTGGAGTACTATCAAGAGACCT
ATTTTATGGGTCAGGCTGAAAGCAGGGAAGAGTCCGATGAGATACCCTATGAAGAGATGGAGTTCTTCAC
AACTACAAGTGGGAACACTTACTTTGCCTTCCTGTCTGTGGAAGATGAGCAGCAGATACACAGTCGGCCC
CATTCCCACCACAATCTGCTCAACTCTTTCTGCACCAAGTACATAGAGCAAGTGTCTATTCCTCAGAAAC
TAATCCTGAAGGTTAAGAAAGGGCTTCGAGCTGGCTTCTTTGAACATCTTGAGAAATGGTTTGATCAGTG
TGTCCTCAATGCTCGTATCATTGTGGCTTCCAAGGTTGATGAACTGGATTCAGAACTGGAGCTACGGCTG
CACCTTCACAAGCCAAGACTCGAGCAAGTGGAGAAGGATATTCACAATGTCAGAGCAGCGGAGCTCCTGC
TTCACCAAGAGAGGCTGGACAGCCACTGTGCCGGTGTGATCGAGACACTGAAGAAGGAGAGGCTCATGTT
CTGTCAGTTCCAAGAAGAGCAAGCCGTGCGGAGCAGGAACTTCCGCCGCAAGATCTACGACATGGAGCAC
ATTTTCCTGAATGCTACCAGAAGCCAAAAGCTGGTCAGTCTCACCAAGACACTACACCGAGAGCTGCTCA
GCTACGTGGATGTCATCCAGGTGTCCCTGCGAAGCTTCCGGCAGTACCTGGAAGAGAGTCTGGGCAAGCT
GCGCTATACCAACATTGACTTTGTCAAGCACTGCAGATTGTTCTCAGAGGGTGGCAACTTTTCCCCTGAA
GAAGTTGAGACGCTGTGCCACCGACTGGAGAAGGAGGCTACCCGGATTGAGTTCGTTGAAAGTTTAATTA
TGATCCACATGGAAAAGATGGAGACAGAGTACCTGGACCAGGCCAACGATGTCATCAACAAATTCGAGAG
TAAATTCCATAACCTATCTTCAGACCTTATTTTCGTAGAGAAAATCCAGCGGCTGATGACAAATCTTCAA
GTGAATATCAAGTGTCAGGAGGCAAAGTCCAATTCCCAGGCGGAAGGATTAAATTCTTCTCTGGAACAGC
TTCAGCAGAAGATACAAACGTGTCAAGACCACCGGGGAGATAAGGATATAGTGACCACAGACGATCTCCT
TGCCTTTGTCCGATCCTGGAAAGAAAAACTGAGCCAGAGGATTAAGTACCTCAACTGTAGCCTGGATATG
GTGTCTATCACTCAGGAGGTCTTTACGGACACCATCCTGGCTGACACTGAAGTGGAGAGTGACATGCATA
TGAGTATGGAGGCCCTTGAGGAGGACGTCAAGGTGGGCCTTGTCACCCCTGAGTCCTTTGCCCAACCAAC
CCGCATGGGGAGGCCCATGATTGAAGACCCCGCTGTGGATGTGGTCAGAAGGATCCTTCAAATTTCTCAG
GCAAAATCAACATGCCCGTGTGACAAGGATCGCTCCCAAACAGCCTTGAAGAGAAGGTACCGGGCAGAGA
AGGCCTTAAAGAAGGCCTTGGCCAGCGCCAGTGTCACCTCAGCAGGGAGCATGACACGACATCCCAAGTA
CATCAGAGTTGACAAAAAGTACCAGGTGCTTGGGGAAAAGCCTACTTCCCAGGCTGAGGATTTTAAAGGC
ATCATCCTGAATCTCCTGTGGGAGAGCAATGAGCACCTGATGGTCGTGGTGGAGGATTTTTACCGTAAAG
AGAAACGCCCAGTCACAAGGCCTGAATGCATGTATGAGAGCTTTGACCAGTGCGCCGACCACATCAGCAG
GAAGATCCTAGAATATCACCGTCAGGCGGACGAGTACCACAACTCCTGCCTTCTGGAGTTGCGTGCCCAG
GTGAGGAGGTTTGAGGAGCTGCTGCCCCAGGTGTGCTGGCTGGTGACGGAGAACTACAAGGAACAGCACT
GGGGCAAGTTTTGCGCATCTCTGAAGGAGGTCCAGGAGCAGTTTGAGCAGCAGCAGAAGCAGCTAGAGCT
GGAGAAGGATGAAAATGCTCGGAAGCTCCATCCAAATCTTGGCCACCCCACATACATCAGTCAAATGGAG
TCACTACAAATGGCGGAGGAGCTGAGGCAGCAGGAGCTGAACCGGATGATCCACGAGAACCAGGAGAAGA
TGGAGGAATTTGCCAAGAAGTATGCCCGCTTCTTCATATCAAATTTGGCCTCCTTCACAGAGAGGTTTCT
GATGCAGCTGGATGAAGTGATTACCATAGATGACATCCAGGTCCCACGGTCGGAGCCCCCAAAGCAGAAA
GTCTCAATCCTCATACGGAGGAAGCTGGCCATGCTCTCTCTGGAGGAAGAGAGCGAGAAGCCCCTGATTG
AACGTGGGAGCAGGAAGTGGCCAGGCATCAAGCCCAACGAAATCACCATTCAGAACAAGATACTGACTCG
GAGGACACCATCAATAACCACCAATAAGACCACCCTGGGCCACTTGGCCGCCATAGAAGCCCGAGATGCC
GTTTACCTGAAATACTTGGCACTGTTTGACAAAGAACTGAAGGGTATCCAGGATCACTTCAGGAAGCTGC
TGTTGGAGTCTCAGCGCTGGAAGGAAAGCTGGAAACGCTCCCTTAGCACCATCCAGACCCTATACTCGAC
CTGTTCTCCTCTGCAACTCAAATAA

Translation (1664 aa):
MREPPGLERRGIGPAVKMSPVGKVSQVQNGKVYQQIFQAQVQLVQSLAATRKQAAERSETQKNVKTPMMK
KVPLPEGETMTPRQRKWVRSLPNDWVTENPVLYREKEEARKEKERLTDDMIASQEVQGLMDNIVPQLTER
VSNLQEQEEFKKRKYLSALASFQEELEQIGVEMEPLILEKGDLLLRKISKSDEDVDMLFKKVEGEPDLES
HTIETLLELWEKVAERFMQQKQEIKELDEELLALEVSRADKLKEVLKRYVGIIEKTSYILQPDVYRLIDK
EAMAMNQALLGNRRAIAQLLVNLTESTLQQELDNRHRWQGLVDTWKALKKEALIQSFSEFMASEEIQEPP
EVKKKLEEMQKNQEMLQSVRLDHLCTLCDLLPPNYNKTQLTEWYDSLTSLNKQLDTYHMDCMSLVHFLYE
KIWQQCLSHVQECKQQLLNWKAFSEAEAESLVNPTFFLMVGEFQSKVEKQLELLDNSFEDLARETEWQSS
DLFRYFQEAVKLWEGHQSVLMTQELELEKRIEQHRQKHNQENQNQETLLDKLLDQLRQQSQEESLKAHME
KARTFLKNMKSRYECFHLLLTKEVMEYPGLVLKELNCYSFTLSRHFFIREIFEQNLSGEVIFKFRQPETH
EKLFIQKIRKMKKKQRKRKGEESIGQDLGSEKPTESMKEEGSGESEPSTAGEALNQENKSPQSDRVSEPR
DGPSQEAEETLGVRETSSETSQDRENLKVQEEKEEIEEEEEEEEEEEEEEIKEERVEEEEKEEEEEEEEE
IKEDEEEEDEYENEDVLEYYQETYFMGQAESREESDEIPYEEMEFFTTTSGNTYFAFLSVEDEQQIHSRP
HSHHNLLNSFCTKYIEQVSIPQKLILKVKKGLRAGFFEHLEKWFDQCVLNARIIVASKVDELDSELELRL
HLHKPRLEQVEKDIHNVRAAELLLHQERLDSHCAGVIETLKKERLMFCQFQEEQAVRSRNFRRKIYDMEH
IFLNATRSQKLVSLTKTLHRELLSYVDVIQVSLRSFRQYLEESLGKLRYTNIDFVKHCRLFSEGGNFSPE
EVETLCHRLEKEATRIEFVESLIMIHMEKMETEYLDQANDVINKFESKFHNLSSDLIFVEKIQRLMTNLQ
VNIKCQEAKSNSQAEGLNSSLEQLQQKIQTCQDHRGDKDIVTTDDLLAFVRSWKEKLSQRIKYLNCSLDM
VSITQEVFTDTILADTEVESDMHMSMEALEEDVKVGLVTPESFAQPTRMGRPMIEDPAVDVVRRILQISQ
AKSTCPCDKDRSQTALKRRYRAEKALKKALASASVTSAGSMTRHPKYIRVDKKYQVLGEKPTSQAEDFKG
IILNLLWESNEHLMVVVEDFYRKEKRPVTRPECMYESFDQCADHISRKILEYHRQADEYHNSCLLELRAQ
VRRFEELLPQVCWLVTENYKEQHWGKFCASLKEVQEQFEQQQKQLELEKDENARKLHPNLGHPTYISQME
SLQMAEELRQQELNRMIHENQEKMEEFAKKYARFFISNLASFTERFLMQLDEVITIDDIQVPRSEPPKQK
VSILIRRKLAMLSLEEESEKPLIERGSRKWPGIKPNEITIQNKILTRRTPSITTNKTTLGHLAAIEARDA
VYLKYLALFDKELKGIQDHFRKLLLESQRWKESWKRSLSTIQTLYSTCSPLQLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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