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Report for CCDS19365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19365.1 Public Mus musculus 5 Cep135 23 108 98 CCDS HistoryNCBI Gene:381644Re-query CCDS DB by CCDS ID:19365.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19365.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049060.7 ENSMUSP00000038674.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049060.7Link to Ensembl Protein Viewer:ENSMUSP00000038674.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049060Re-query CCDS DB by Protein ID:ENSMUSP00000038674
Original member Current member EBI ENSMUST00000121979.7 ENSMUSP00000112602.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121979.7Link to Ensembl Protein Viewer:ENSMUSP00000112602.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121979Re-query CCDS DB by Protein ID:ENSMUSP00000112602
Original member NCBI NM_199032.3 NP_950197.1 Updated not alive Link to Nucleotide Sequence:NM_199032.3Link to Protein Sequence:NP_950197.1Re-query CCDS DB by Nucleotide ID:NM_199032Re-query CCDS DB by Protein ID:NP_950197
Current member NCBI NM_199032.4 NP_950197.1 Accepted alive Link to Nucleotide Sequence:NM_199032.4Link to Protein Sequence:NP_950197.1Re-query CCDS DB by Nucleotide ID:NM_199032Re-query CCDS DB by Protein ID:NP_950197Link to BLAST:NP_950197.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950197.1 1140 Q6P5D4 1140 100% 0 0

Chromosomal Locations for CCDS 19365.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76591759 76591871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76593192 76593382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76594023 76594190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76595393 76595534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76597357 76597441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76601387 76601515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76603137 76603352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76606722 76606787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76609631 76609769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76611650 76611873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76615638 76615790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76616803 76616955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76621284 76621361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76624627 76624778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76630665 76630780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76630853 76631007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76631425 76631480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76632159 76632327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76633673 76633783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76634152 76634337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76636862 76637071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76638064 76638266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76638922 76639026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76640882 76640984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3423 nt):
ATGACTACAGCTGCAGAGAGAAAGTATATTAACATTCGGAAGAGGTTAGACCAGCTGGGCTACCGCCAGA
CCCTGTCAGTGGACAGTCTGCCTTTGGTAGAAAAACTTTTCAGTGACCTCGTTCATACGACAGAAAGCCT
GCGGCAGTGCAGGTTGTCCTCGGGAAAGGCGGAAAAGGAAAGTGCCAATCTCGATTTTGTTTTGGAACCT
TATAAACTTGAAAATACAAGACTGAATAAGGAGAATAATGAATTGTATCTGGAGTTAATGAAGCTCAGAG
AATGCTCAGACAAGCACATTAAAGACTTGAAGACGACACTGAAGAAATGTTCCCGTGAGACAGCTGATCT
GAAGTTTCTGAACAACCAGTATGTTCACAAGGTCAAAGTCCTGGAGAAAGAGAGCAAAGCCAAGGATGAA
AAGATCCAGCAGCTTCAAGAGAAGAACCTGCGTGCTGTGGTGCAGACCCCTGGTGGCAGGAAAAGAAACA
TTGCATTTAGGCGCCAGCGGATGCAAATCGATGAACCAGCCCCACCCTCAGAAGTCAGCGCATACCCGGT
TCCTCAACCAGAAGACCCATACATTGCGGACCTCCTGCAAGTGGCTGACAACAGGATTCAGGAGCTGCAG
GAGGAGGTCCAGCAGCTGCAGGAGAAGCTAGCACAGATGGAGAAAGGAGTGCTGGACTACAGCAAGCAGA
TTGAACTGAGAGAACGAGAAATACAGCGACTGTCACTTGCGTTGGATGGCGGTTGTTCCCCTGATGTCCT
GTCTCTGGAGACCAGAAATAAAACCAATGAGAAACTCATTGCTCACTTAAATGTCCAGGTTGACTTCCTC
CAGCAAGCTAATAAAGAGCTGGAGAAGCATATTCAAGAGCTCATGGAAACCAAGGAAACAGTGACAACTG
AAGTTGTGAACCTCAGCAACAGAAACGAGAAGCTCTGCCAGGAGCTAACCGAGATCGACCAGTTAGCCCA
GCGGCTGGAAAGGCACAAGGAGCAAGTGCTGGAGACAGCAGACAAGGAGCTCGGGGAGGCAAAGAAAGAG
ATTAAACGAAACCTCTGTGAAATGCGGAACCTTGAGGAAAAAATGTCAAAACTGCAGTGGGAATTGGACT
TAAGCCATAAGGAGAAGGAGAGACTGAACAGTGAGCTGCTTTTAAAGTCAGACCTGGAGACTGTTGTTCA
TCAGCTCGAACAAGAAAAGCAAAGACTTAGCAAAAAGCTGCAGAGTTTTGCAGTCACAGAAAGAGAACTG
ACTCTGGAGGTTGAGAGGATGAGGCTAGAACATGGGATAAAGCGTCGGGACAAGTCACCCTCTCGTCTGG
ACACATTTCTGAAAGGCATAGAGGAAGAGCGCGATTATTACAAGAAAGAGCTGGAGAAACTGCAGCATCT
AATCCAGCGGAGATCTTGTGCGATTAATTACTCCGCTCGGGAAAAACCTCCTGTAGTCAAATGCTCAGAA
AAGGGTGACTGCAGCACGGACGTTCACCTGATCACAAGAGAAAGGGATGAACTTCAGCGCATGCTGGAGA
GATTCGAGAAATACATGGAGGACATACAGTCCAACGTGAAGCTGCTGACGGCGGAAAGGGACAAGCTGAA
TGTCCTGTATAAGGAAGCAAAGGAAGAGTTGTCTACACTAAGGAAGGAGTCCACTAATTCGACATCCCCC
AACCATCTTGTTAGTTGTGTAGAAAAGGAGAAAGAACGCGCGTTATCTGAGTTGAGAAGAATTACAGCAG
AAAAGGAAGCTCTGAGAGAAAAGTTGAAAAACATCCAAGAAAGGAATGCTGTTGGAAAATCAGACTTAGA
GAAAACTATTGAACATTTGACATATATTAATCACCAGCTTGAAAATGAAAAATATGAATTGCAATCTAAA
ATGTTAATGATGAAAGAAACAGTGGAGTCATTAGAGAACAAATCAAAACTCCAAGCTCAAAAGCTTAGCC
ATGTGACTGGTGACTCATCTCATCAGAAAACAGAGATGACCTCCCTTAGGATCGTCAGTGAGCAGCTACA
GCGCTCACTTGATGACTGTCAGCACCGACTTTCCATAAAAAGAGGTGAACTTGAATCAGCCCAAGAGCAA
ATTAAAATGCTGGAGCAAAAACTAGAGAATCTCAGCCACAGGATGACGGTGCAGAGCGAAGAGACTCACG
CCATGAAGAAGACCATTGGAGTGATGGACAAAGAAAAGGACTTTCTCCAGGAGACTGTGGATGAGAAGAC
AGAAAAGATCGCCAACCTGCAGGAAAGCCTCCTTAGTAAAGAAAAAGTCATTGCCCAGTTGAAGGTCACA
GTTGCAGAGTATGAAACATCACTTAACCAGCTACAAGAAACTTTGACTACTCGAGACCGAGAGATAAACA
GCCTCCGGCGCCAGCTTGATGCATCTCACAAGGAGCTTGATGATGTTGGGAAATCTAGAGAGATCTCTTT
TAAGGAAAATAGAAGGTTACAAGATGACCTGGCCACAATGGCGAGAGAAAATCAGGAGATCTCACTGGAG
CTGGAAGCAGCAGTGCAAGAAAAAGAAGAGATGAAGAGCAGAGTCCATAAGTACATCACTGAGGTGTCGC
GGTGGGAGAGCCTGATGGCCGCCAAGGAAAAAGAAAACAAAGACTTGCTGGATAGATTCCAGATGCTCCA
CAGCCGTGCTGAGGACTGGGAGGTCAAGGCTCAGCAAGCGGAAGGGGAGAACAGCTCAGTCCGCCTGGAG
CTGCTGTCTATCGACACAGAGAGAAGGCATCTGCGGGAACGAGTGGACCTCCTGGAGAAGGAGATCCAGG
AGCACATCAATGCACATCACGCATACGAGTCTCAGATCTCGTCAATGGCTAAGGCCATGTCTCAGTTAGA
AGAGGAGCTGCGACGTCATGAGAGCGAGAAAGCCACCATGTTAGGTGACGTGTCGTCTCTCCGAGAACTG
TGCATCAAGCTCGACTCAGGCAAAGACGTCATGACCCAGCAGCTGAATTCCAAAAGCCTAGAGCTGGAGC
GGGCGGTAGCAGAATTAGAGAATGTAAAATCAGAATCAGAACTATTAAAAAAACAGCTGACGAATGAGAG
ACAGACAATTAAAAACCTTGAGTCGTTGTTAGCTACAAACAGAGATAAAGAGTTCCAGTCCCATTTAACC
TCCCACGAGAAGGACACAGAAATCCAGCTGCTGAAGGAGAAGCTAAATCTCTCAGAAAGCAAACTGACTA
CCCAAAGCCGAGAAACCTCCATGCTTCGAACTAAAGTGACACAGTTGCAGACAGATTATGATAATCTGAA
GAGGCAGATGTCAAACGAGAAGTACGAACGAGAGCGAGCAATCCAAGAGATGCGCCGACTTGGTCTTCCT
ACATCACCTCTGAGCTCTACTCTGAAATCTCCTGTACAGACTCCTGATCATATAAATGCATAG

Translation (1140 aa):
MTTAAERKYINIRKRLDQLGYRQTLSVDSLPLVEKLFSDLVHTTESLRQCRLSSGKAEKESANLDFVLEP
YKLENTRLNKENNELYLELMKLRECSDKHIKDLKTTLKKCSRETADLKFLNNQYVHKVKVLEKESKAKDE
KIQQLQEKNLRAVVQTPGGRKRNIAFRRQRMQIDEPAPPSEVSAYPVPQPEDPYIADLLQVADNRIQELQ
EEVQQLQEKLAQMEKGVLDYSKQIELREREIQRLSLALDGGCSPDVLSLETRNKTNEKLIAHLNVQVDFL
QQANKELEKHIQELMETKETVTTEVVNLSNRNEKLCQELTEIDQLAQRLERHKEQVLETADKELGEAKKE
IKRNLCEMRNLEEKMSKLQWELDLSHKEKERLNSELLLKSDLETVVHQLEQEKQRLSKKLQSFAVTEREL
TLEVERMRLEHGIKRRDKSPSRLDTFLKGIEEERDYYKKELEKLQHLIQRRSCAINYSAREKPPVVKCSE
KGDCSTDVHLITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLNVLYKEAKEELSTLRKESTNSTSP
NHLVSCVEKEKERALSELRRITAEKEALREKLKNIQERNAVGKSDLEKTIEHLTYINHQLENEKYELQSK
MLMMKETVESLENKSKLQAQKLSHVTGDSSHQKTEMTSLRIVSEQLQRSLDDCQHRLSIKRGELESAQEQ
IKMLEQKLENLSHRMTVQSEETHAMKKTIGVMDKEKDFLQETVDEKTEKIANLQESLLSKEKVIAQLKVT
VAEYETSLNQLQETLTTRDREINSLRRQLDASHKELDDVGKSREISFKENRRLQDDLATMARENQEISLE
LEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENKDLLDRFQMLHSRAEDWEVKAQQAEGENSSVRLE
LLSIDTERRHLRERVDLLEKEIQEHINAHHAYESQISSMAKAMSQLEEELRRHESEKATMLGDVSSLREL
CIKLDSGKDVMTQQLNSKSLELERAVAELENVKSESELLKKQLTNERQTIKNLESLLATNRDKEFQSHLT
SHEKDTEIQLLKEKLNLSESKLTTQSRETSMLRTKVTQLQTDYDNLKRQMSNEKYERERAIQEMRRLGLP
TSPLSSTLKSPVQTPDHINA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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