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Report for CCDS22402.2 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
22402.2 |
Public |
Mus musculus |
8 |
Unc13a |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:382018](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:22402.2](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 8 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public Note for CCDS 22402.2 |
The coding region has been updated to represent a splice pattern that is more supported by the available transcript and protein data. The update results in a protein that is shorter, changes the splice pattern reflected by the CDS, and changes the sequence of the protein. |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq, Havana and CCDS collaboration) Sequence IDs included in CCDS 22402.2
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000030170.14 |
ENSMUSP00000030170.8 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000030170.14](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000030170.8](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000030170](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000030170](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001029873.2 |
NP_001025044.2 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001029873.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001025044.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001029873](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001025044](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001025044.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001025044.2 |
1712 |
Q4KUS2 |
1712 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 22402.2
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5139 nt): ATGTCTCTGCTGTGCGTGGGAGTCAAAAAAGCCAAGTTTGACGGTGCCCAAGAGAAGTTCAACACATACG TGACGCTGAAGGTGCAGAACGTGAAGAGCACTACCATAGCTGTACGTGGCAGCCAGCCCAGCTGGGAGCA GGACTTCATGTTTGAGATCAACCGCCTGGATCTAGGCCTGACCGTGGAGGTGTGGAACAAGGGTCTCATC TGGGACACGATGGTGGGTACTGTGTGGATCCCGCTGCGGACCATCCGCCAGTCCAATGAGGAGGGCCCAG GAGAGTGGCTCACACTGGACTCTCAGGCCATCATGGCGGACAGTGAGATCTGTGGGACCAAGGACCCCAC CTTCCATCGCATCCTCCTGGACGCTCATTTCGAGCTGCCGTTGGACATCCCTGAGGAGGAGGCACGCTAC TGGGCCAAGAAGCTGGAGCAGCTGAATGCCATGCGTGACCAGGATGAGTACTCCTTCCAGGACCAGCAGG ACAAGCCGCTGCCAGTGCCCAGCAGCCAGTGCTGCAACTGGAATTACTTTGGCTGGGGAGAACAGAATGA CGACCCCGACAGTGCGGTGGATGACCGGGACAGTGACTATAGGAGTGAGACCAGCAACAGCATCCCACCG CCCTACTATACGACTTCGCAGCCCAACGCCTCTGTGCACCAGTACTCCGTGCGACCGCCCCCTCTGGGGT CCCGGGAGTCCTACAGTGACTCCATGCACAGCTATGAGGAGTTCTCTGAGCCGCGGGCGCTCAGCCCCAC AGGCAGCAGCCGCTATGCTTCTTCCGGGGAGCTGAGCCAGGGAAGCTCACAGCTGAGCGAGGACTTCGAC CCTGATGAGCACAGCCTGCAGGGCTCGGAGCTGGATGACGAGAGGGACCGCGATTCTTATCACTCCTGTC ACAGCTCCGTGAGTTACCACAAGGACTCACCCCGCTGGGACCAGGACGATGAGGACCTGGAGGACCTGGA GGACCTGGAAGATGAGGAGCTGCCCGAGGAGGAGGAGGAGTTGGAGGAGGAGGGGGAGGAGGAATTGGAG GAAGAGGATTTGGAGGAGGAGGAGGAGGTGCCTGATGACCTGGCCAGCTACACCCAGCAGGAGGACACCA CTGTGGCTGAGCCCAAAGAGTTCAAGCGGATCAGCTTCCCAACGGCTGCGCCTCAGAAGGATGACAAGGT TTCAGCTGTGCCTACAGAGGCCCCCGAGGTGGCCAAAGGCATCCCCAAAGCAGCCACACCCGAGGAGAAG GCAGCTGCAGAGCGTGCGCAGGAAGCCGAGCCCCCCAAGTCTGAGGAGAGTTTCAGATCTCGAGAGGAGG AAGAGGGCCAGGAAGGGCAGGATGCCATGTCCAGAGCCAAAGCCAACTGGTTGCGAGCCTTCAACAAGGT GCGCATGCAGCTGCAGGAGGCCCGAGGAGAAGGGGATATGTCTAAGTCTCTATGGTTCAAAGGCGGTCCT GGTGGTGGCCTTATCATCATTGACAGCATGCCAGACATCAGGAAACGGAAGCCCATTCCCCTCGTGAGCG ACCTGGCTATGTCATTGGTGCAGTCTCGGAAGGCAGGCATCACCTCGGCCTTGGCCTCCAGCACGTTGAA CAATGAAGAGCTGAAAAATCACGTTTACAAGAAGACCCTGCAAGCCTTAATCTACCCCATCTCCTGCACC ACGCCGCACAATTTCGAGGTGTGGACGGCCACCACGCCCACCTACTGCTATGAGTGCGAGGGGCTGCTGT GGGGCATCGCGCGGCAGGGCATGCGATGCACCGAGTGCGGCGTTAAGTGCCACGAGAAGTGCCAGGACCT GCTCAATGCGGATTGCCTGCAGCGGGCGGCTGAGAAGAGTTCCAAGCATGGCGCTGAAGACCGCACGCAG AACATCATCATGGTGCTGAAGGACCGCATGAAGATCCGCGAGCGCAACAAGCCTGAGATCTTCGAGCTTA TCCAAGAGATCTTCGCGGTCACCAAGAGCGCACACACACAGCAGATGAAAGCTGTCAAGCAGAGTGTGCT GGACGGCACATCCAAGTGGTCTGCCAAAATTAGCATCACAGTGGTCTGTGCCCAGGGCTTGCAGGCCAAG GACAAGACAGGATCCAGTGACCCTTATGTCACCGTCCAGGTTGGGAAGACCAAGAAAAGGACAAAAACCA TCTACGGGAACCTCAACCCAGTGTGGGAAGAGAATTTTCATTTTGAATGTCACAACTCCTCTGACCGGAT CAAGGTTCGTGTTTGGGATGAAGATGACGACATAAAATCCCGTGTGAAACAAAGGTTTAAGAGGGAGTCT GATGACTTCCTAGGGCAGACAATCATCGAGGTGCGGACGCTTAGCGGCGAGATGGATGTGTGGTACAATC TGGACAAGAGAACGGACAAGTCGGCGGTGTCGGGGGCCATCCGGCTTCACATCAGTGTGGAGATCAAAGG GGAGGAGAAGGTGGCGCCCTACCATGTCCAGTACACCTGTCTGCATGAGAACCTGTTCCACTTTGTGACG GACGTGCAGAACAATGGTGTGGTGAAGATTCCCGATGCCAAGGGTGACGACGCCTGGAAGGTTTACTACG ATGAGACGGCCCAGGAGATCGTGGATGAGTTTGCCATGCGCTATGGTGTTGAGTCCATCTACCAAGCCAT GACCCACTTTGCCTGCCTCTCCTCCAAGTATATGTGCCCTGGGGTACCCGCTGTCATGAGCACCCTGCTT GCCAACATCAACGCCTACTACGCACACACCACCGCCTCCACCAACGTGTCTGCCTCTGACCGCTTCGCTG CCTCTAATTTCGGGAAAGAGCGCTTTGTGAAACTTCTGGACCAGCTACACAATTCTCTGCGGATCGACCT GTCCATGTACCGGAACAACTTCCCAGCCAGCAGCCCTGAGCGGCTGCAGGATCTCAAGTCCACGGTGGAC CTGCTCACCAGCATCACCTTCTTCCGGATGAAGGTTCAGGAACTGCAGAGCCCGCCGCGTGCCAGCCAGG TAGTGAAAGACTGTGTGAAGGCCTGCCTCAACTCCACCTATGAGTACATCTTCAACAACTGCCATGAGCT CTATGGCCGGGAGTACCAAACGGATCCGGCCAAGAAGGGGGAGGTTCCCCCAGAGGAGCAAGGCCCTAGC ATCAAGAACCTGGATTTCTGGTCCAAGCTGATCACCCTCATCGTGTCTATCATCGAGGAGGATAAGAATT CTTACACACCCTGCCTCAATCAGTTTCCCCAGGAGCTCAATGTGGGGAAGATCAGTGCTGAGGTGATGTG GAGCCTATTTGCCCAAGACATGAAGTACGCCATGGAGGAACATGACAAACACCGGCTGTGTAAGAGCGCA GATTACATGAACCTGCACTTCAAGGTGAAGTGGCTGTACAATGAGTACGTGGCCGAGCTGCCCACCTTCA AGGACCGTGTGCCTGAGTACCCTGCGTGGTTTGAGCCCTTCGTCATCCAGTGGTTGGATGAGAATGAGGA GGTGTCCCGGGACTTCCTGCATGGTGCCCTCGAGCGGGACAAGAAGGACGGGTTCCAGCAGACCTCAGAG CACGCCCTGTTCTCTTGCTCAGTGGTGGACGTCTTCTCCCAGCTTAACCAGAGTTTCGAGATCATCAAGA AGCTGGAGTGTCCTGACCCCCAGATCGTGGGCCATTACATGCGGCGTTTTGCCAAGACCATTAGCAATGT GCTTCTCCAGTATGCAGACATCGTTTCCAAGGACTTCGCCTCCTACTGCTCCAAGGAGAAGGAGAAAGTG CCCTGCATCCTCATGAACAACACACAGCAACTACGAGTGCAGCTGGAGAAGATGTTTGAGGCGATGGGCG GGAAGGAGCTGGATGCCGAGGCCAGTGGCACCCTGAAGGAGCTGCAGGTGAAACTCAACAATGTCCTGGA TGAACTCAGCCATGTGTTTGCCACCAGCTTCCAGCCACACATTGAGGAATGCGTCAGACAGATGGGTGAC ATCCTGAGCCAGGTGAAGGGCACAGGCAATGTACCTGCCAGTGCCTGCAGCAGCGTGGCCCAGGATGCAG ACAATGTGCTGCAGCCCATCATGGATCTTCTGGACAGCAACCTCACCCTGTTTGCCAAAATCTGTGAGAA GACAGTTCTGAAGCGGGTGCTGAAGGAGCTCTGGAAGCTGGTGATGAACACAATGGAGAAGACCATCGTC CTGCCACCGCTCACTGACCAGACGATGATTGGCACCCTCTTGAGAAAACATGGCAAGGGCCTAGAAAAGG GCAGGGTGAAACTGCCAAGCCACTCAGACGGGACACAAATGATCTTCAATGCTGCCAAGGAGCTGGGCCA GCTGTCCAAACTTAAGGATCACATGGTGCGGGAAGAAGCCAAGAGCTTGACCCCGAAGCAGTGTGCTGTT GTTGAACTGGCCCTGGACACCATCAAGCAATACTTCCACGCGGGGGGCGTTGGCCTCAAGAAGACCTTCC TGGAGAAGAGCCCGGACCTCCAGTCCCTGCGCTACGCCCTGTCGCTCTACACGCAAGCCACCGACCTGCT CATCAAAACCTTCGTGCAGACGCAGTCAGCGCAGGGCTCTGGTGTGGAGGACCCTGTAGGTGAAGTGTCC GTCCACGTGGAGCTGTTCACACATCCAGGAACTGGGGAACAGAAGGTCACAGTGAAGGTGGTGGCCGCCA ATGACCTCAAGTGGCAGACTTCTGGCATCTTCCGCCCGTTCATCGAGGTCAACATCGTTGGACCTCAGCT TAGCGACAAGAAACGCAAGTTCGCCACCAAATCCAAAAACAACAGCTGGGCGCCCAAGTATAACGAGAGC TTCCAGTTCTCCCTGAGCGCCGACGCGGGCCCCGAGTGCTACGAGCTGCAGGTGTGCGTGAAGGACTACT GCTTTGCGCGCGAAGACCGCACGGTGGGGCTGGCGGTGCTGCAACTGCGAGAGCTGGCCCAGCGCGGGAG CGCCGCGTGCTGGCTTCCACTCGGCCGCCGCATCCACATGGACGACACGGGGCTCACAGTGCTGCGCATC CTGTCGCAGCGCAGCAACGATGAGGTGGCCAAGGAATTCGTCAAGCTCAAGTCGGACACGCGCTCAGCCG AGGAGGGCGGTGCCGCGCCTGCGCCCTAG
Translation (1712 aa): MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGLI WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPLDIPEEEARY WAKKLEQLNAMRDQDEYSFQDQQDKPLPVPSSQCCNWNYFGWGEQNDDPDSAVDDRDSDYRSETSNSIPP PYYTTSQPNASVHQYSVRPPPLGSRESYSDSMHSYEEFSEPRALSPTGSSRYASSGELSQGSSQLSEDFD PDEHSLQGSELDDERDRDSYHSCHSSVSYHKDSPRWDQDDEDLEDLEDLEDEELPEEEEELEEEGEEELE EEDLEEEEEVPDDLASYTQQEDTTVAEPKEFKRISFPTAAPQKDDKVSAVPTEAPEVAKGIPKAATPEEK AAAERAQEAEPPKSEESFRSREEEEGQEGQDAMSRAKANWLRAFNKVRMQLQEARGEGDMSKSLWFKGGP GGGLIIIDSMPDIRKRKPIPLVSDLAMSLVQSRKAGITSALASSTLNNEELKNHVYKKTLQALIYPISCT TPHNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCLQRAAEKSSKHGAEDRTQ NIIMVLKDRMKIRERNKPEIFELIQEIFAVTKSAHTQQMKAVKQSVLDGTSKWSAKISITVVCAQGLQAK DKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVWDEDDDIKSRVKQRFKRES DDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVEIKGEEKVAPYHVQYTCLHENLFHFVT DVQNNGVVKIPDAKGDDAWKVYYDETAQEIVDEFAMRYGVESIYQAMTHFACLSSKYMCPGVPAVMSTLL ANINAYYAHTTASTNVSASDRFAASNFGKERFVKLLDQLHNSLRIDLSMYRNNFPASSPERLQDLKSTVD LLTSITFFRMKVQELQSPPRASQVVKDCVKACLNSTYEYIFNNCHELYGREYQTDPAKKGEVPPEEQGPS IKNLDFWSKLITLIVSIIEEDKNSYTPCLNQFPQELNVGKISAEVMWSLFAQDMKYAMEEHDKHRLCKSA DYMNLHFKVKWLYNEYVAELPTFKDRVPEYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSE HALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKEKEKV PCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGD ILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMEKTIV LPPLTDQTMIGTLLRKHGKGLEKGRVKLPSHSDGTQMIFNAAKELGQLSKLKDHMVREEAKSLTPKQCAV VELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQTQSAQGSGVEDPVGEVS VHVELFTHPGTGEQKVTVKVVAANDLKWQTSGIFRPFIEVNIVGPQLSDKKRKFATKSKNNSWAPKYNES FQFSLSADAGPECYELQVCVKDYCFAREDRTVGLAVLQLRELAQRGSAACWLPLGRRIHMDDTGLTVLRI LSQRSNDEVAKEFVKLKSDTRSAEEGGAAPAP
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