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Report for CCDS18428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18428.1 Public Mus musculus 4 Ssbp3 23 108 98 CCDS HistoryNCBI Gene:72475Re-query CCDS DB by CCDS ID:18428.1Re-query CCDS DB by GeneID:72475See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072753.12 ENSMUSP00000072536.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072753.12Link to Ensembl Protein Viewer:ENSMUSP00000072536.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072753Re-query CCDS DB by Protein ID:ENSMUSP00000072536
Original member Current member NCBI NM_198438.1 NP_940840.1 Accepted alive Link to Nucleotide Sequence:NM_198438.1Link to Protein Sequence:NP_940840.1Re-query CCDS DB by Nucleotide ID:NM_198438Re-query CCDS DB by Protein ID:NP_940840Link to BLAST:NP_940840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940840.1 361 Q9D032-2 361 100% 0 0

Chromosomal Locations for CCDS 18428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 106911857 106911912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106912903 106912975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106913205 106913266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 106915645 106915729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107009679 107009768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107028193 107028252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107030862 107030928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107031015 107031091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107036936 107037000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107037602 107037650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107038222 107038257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107038726 107038780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107039963 107040033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107046316 107046394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107047242 107047270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107047364 107047465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107048024 107048053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGTTTGCCAAAGGCAAAGGCTCGGCGGTGCCCTCGGACGGGCAGGCTCGGGAAAAGTTAGCTTTATACG
TCTACGAATATTTACTGCACGTAGGAGCACAGAAATCTGCACAGACCTTCTTATCAGAGATTCGATGGGA
AAAAAACATCACACTGGGTGAACCGCCTGGGTTCCTGCACTCGTGGTGGTGTGTATTTTGGGACCTTTAC
TGTGCAGCTCCTGAAAGGAGAGACACTTGTGAACATTCAAGTGAAGCAAAAGCCTTTCATGATTATAGTG
CAGCAGCTGCCCCAAGCCCTGTGCTTGGCAACATTCCCCCCAATGATGGGATGCCCGGAGGCCCCATCCC
GCCAGGTTTCTTTCAGCCTTTTATGTCACCGCGATATGCAGGCGGCCCCAGGCCCCCGATCAGAATGGGA
AACCAGCCTCCAGGAGGAGTTCCTGGGACACAGCCACTGCTGCCCAATTCCATGGATCCCACACGACAAC
AAGGTCACCCCAACATGGGAGGATCAATGCAGAGAATGAACCCTCCCCGAGGCATGGGGCCCATGGGGCC
TGGCCCACAGAATTACGGCAGCGGCATGAGACCACCACCCAACTCCCTCGGCCCCGCCATGCCTGGGATT
AACATGGGCCCAGGAGCTGGCAGACCCTGGCCCAATCCCAACAGTGCTAACTCAATCCCGTACTCCTCAT
CATCACCCGGAACCTATGTGGGACCCCCTGGTGGTGGTGGCCCTCCAGGAACCCCCATCATGCCTAGTCC
TGCAGATTCAACAAATTCCAGTGACAACATCTACACAATGATTAATCCTGTGCCGCCTGGAGGCAGCCGG
TCTAACTTTCCAATGGGTCCTGGCTCAGACGGCCCAATGGGAGGCATGGGCGGCATGGAGCCCCACCACA
TGAATGGATCCCTAGGATCAGGTGACATAGATGGACTTCCAAAAAATTCTCCTAACAACATAAGTGGCAT
TAGCAATCCTCCAGGCACCCCTCGCGATGACGGCGAGCTAGGGGGGAACTTCCTCCACTCCTTCCAGAAC
GACAATTATTCTCCGAGCATGACGATGAGCGTGTGA

Translation (361 aa):
MFAKGKGSAVPSDGQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKNITLGEPPGFLHSWWCVFWDLY
CAAPERRDTCEHSSEAKAFHDYSAAAAPSPVLGNIPPNDGMPGGPIPPGFFQPFMSPRYAGGPRPPIRMG
NQPPGGVPGTQPLLPNSMDPTRQQGHPNMGGSMQRMNPPRGMGPMGPGPQNYGSGMRPPPNSLGPAMPGI
NMGPGAGRPWPNPNSANSIPYSSSSPGTYVGPPGGGGPPGTPIMPSPADSTNSSDNIYTMINPVPPGGSR
SNFPMGPGSDGPMGGMGGMEPHHMNGSLGSGDIDGLPKNSPNNISGISNPPGTPRDDGELGGNFLHSFQN
DNYSPSMTMSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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