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Report for CCDS19938.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19938.1 Public Mus musculus 6 Rnf133 23 108 98 CCDS HistoryNCBI Gene:386611Re-query CCDS DB by CCDS ID:19938.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19938.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063548.3 ENSMUSP00000066906.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063548.3Link to Ensembl Protein Viewer:ENSMUSP00000066906.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000063548Re-query CCDS DB by Protein ID:ENSMUSP00000066906
Original member Current member NCBI NM_198251.2 NP_937894.1 Accepted alive Link to Nucleotide Sequence:NM_198251.2Link to Protein Sequence:NP_937894.1Re-query CCDS DB by Nucleotide ID:NM_198251Re-query CCDS DB by Protein ID:NP_937894Link to BLAST:NP_937894.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937894.1 339 Q14B02-2 339 100% 0 0

Chromosomal Locations for CCDS 19938.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 23648909 23649450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 23649580 23650057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGAATCCTCTTCAGACCAGTACTTGGCAAAACCAAGCTCCATCTTTCTGGCTTCTGAGATTCAGTTTTA
TCTGGCTCGTCAGTCAGAAATGTTGTACAGCCAGTGCAGTTTGGACTGCGTACATGAACATATCATTTCA
TGTGGGGAACCGCATGCTGTCAGAGCTGGGGGAGACCGGGGTCTTCGGAAGAAGCTCCATCTTGAAGAGA
GTAGCAGGAGTTGTTGTGCCACCAGAGGGAAAAATTCAAAATGCTTGTGATCCCAATACCACTTTTATCC
TGCCACGGAACAAAGAGCCCTGGATCGCACTCATTGAACGGGGAGGTTGTGCCTTCACACAGAAAATTAA
GGTGGCATCTGAGCACGGAGCCAGAGGAGTGATCATCTATAATTTCCCAGGTACTGGCAACCAGGTTTTC
CCCATGTCTCACCAGGCGTTTGAAGACATCGTTGTAGTTATGATTGGTAACATCAAAGCATATTTCACCT
TTTATCACATTCGGAGACTTTGGGTGGCAAGAATTGAGAACAGGAGATGGAAGCGATTAACAAGAGAGCT
CAAGAAAGCTTTTGGGCAGCTGCAAGTTCGAGTATTAAAAGAAGGGGATGAAGAAGTTAATCCAAATGCT
GACAGCTGTGTCATCTGCTTTGAAGCCTATAAGCCTAATGAAATAGTTCGGATTCTCACTTGCAAACATT
TTTTCCACAAGAATTGCATTGACCCCTGGATTCTAGCCCACGGCACATGCCCCATGTGCAAATGTGACAT
TCTGAAAGCTCTGGGGATTCAGATGGACATTGAGGATGGGACAGACTCTCTGCAAGTTCTGATGTCAAAT
GAATTGCCCGGAACCTTGTCACCCGTGGAAGAAGAGACGAACTATGAGCTTCCTCCTGCAAGAACTTCAA
GTAAAGTGACCCACGTGCAGGAGCACCCTACTTCTTCTGCGAACGCTGGCAGCCAGCCTCCCGAAGCAGA
GGAAACCAGTCATCCTTCACATGGACAGCAAGTCCTTTGA

Translation (339 aa):
MNPLQTSTWQNQAPSFWLLRFSFIWLVSQKCCTASAVWTAYMNISFHVGNRMLSELGETGVFGRSSILKR
VAGVVVPPEGKIQNACDPNTTFILPRNKEPWIALIERGGCAFTQKIKVASEHGARGVIIYNFPGTGNQVF
PMSHQAFEDIVVVMIGNIKAYFTFYHIRRLWVARIENRRWKRLTRELKKAFGQLQVRVLKEGDEEVNPNA
DSCVICFEAYKPNEIVRILTCKHFFHKNCIDPWILAHGTCPMCKCDILKALGIQMDIEDGTDSLQVLMSN
ELPGTLSPVEEETNYELPPARTSSKVTHVQEHPTSSANAGSQPPEAEETSHPSHGQQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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