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Report for CCDS7111.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7111.1 Public Homo sapiens 10 PTER 24 110 108 CCDS HistoryNCBI Gene:9317Re-query CCDS DB by CCDS ID:7111.1Re-query CCDS DB by GeneID:9317See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7111.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378000.5 ENSP00000367239.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378000.5Link to Ensembl Protein Viewer:ENSP00000367239.1Re-query CCDS DB by Nucleotide ID:ENST00000378000Re-query CCDS DB by Protein ID:ENSP00000367239
Original member Current member EBI ENST00000535784.7 ENSP00000439485.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000535784.7Link to Ensembl Protein Viewer:ENSP00000439485.1Re-query CCDS DB by Nucleotide ID:ENST00000535784Re-query CCDS DB by Protein ID:ENSP00000439485
Original member Current member NCBI NM_001001484.3 NP_001001484.1 Accepted alive Link to Nucleotide Sequence:NM_001001484.3Link to Protein Sequence:NP_001001484.1Re-query CCDS DB by Nucleotide ID:NM_001001484Re-query CCDS DB by Protein ID:NP_001001484Link to BLAST:NP_001001484.1
Original member Current member NCBI NM_001261836.2 NP_001248765.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001261836.2Link to Protein Sequence:NP_001248765.1Re-query CCDS DB by Nucleotide ID:NM_001261836Re-query CCDS DB by Protein ID:NP_001248765Link to BLAST:NP_001248765.1
Original member Current member NCBI NM_030664.5 NP_109589.2 Accepted alive Link to Nucleotide Sequence:NM_030664.5Link to Protein Sequence:NP_109589.2Re-query CCDS DB by Nucleotide ID:NM_030664Re-query CCDS DB by Protein ID:NP_109589Link to BLAST:NP_109589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001484.1 349 Q96BW5-1 349 100% 0 0
NP_001248765.1 349 Q96BW5-1 349 100% 0 0
NP_109589.2 349 Q96BW5-1 349 100% 0 0

Chromosomal Locations for CCDS 7111.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 16484385 16484816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 16486352 16486617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 16505020 16505160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 16511046 16511256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGTCTTCCTTAAGTGGAAAAGTCCAAACCGTTTTGGGCCTTGTAGAGCCAAGCAAACTGGGCCGTACCC
TGACCCATGAACACCTGGCCATGACCTTTGACTGCTGTTACTGTCCACCTCCCCCGTGCCAGGAAGCTAT
TTCCAAAGAACCTATCGTGATGAAAAATTTATATTGGATTCAGAAAAACGCCTATTCCCATAAAGAAAAC
CTTCAATTAAATCAGGAGACAGAAGCCATAAAGGAAGAACTGTTGTATTTTAAAGCTAATGGTGGAGGGG
CTTTGGTGGAAAACACAACCACTGGGATTAGCCGAGACACACAGACGTTGAAGAGGCTTGCAGAAGAGAC
TGGCGTCCATATCATATCTGGAGCCGGGTTTTATGTGGATGCAACTCACTCCTCAGAGACCAGGGCCATG
TCAGTGGAGCAGCTTACCGATGTCCTTATGAATGAAATTCTCCATGGAGCTGATGGAACCAGTATCAAGT
GTGGCATTATTGGAGAAATTGGTTGCTCCTGGCCTTTGACTGAGAGTGAAAGAAAGGTTCTCCAGGCCAC
AGCTCATGCCCAGGCTCAGCTTGGTTGTCCTGTTATTATCCATCCTGGACGGAGCTCCAGGGCACCATTT
CAGATTATCCGAATATTGCAAGAAGCAGGCGCAGACATCTCCAAAACAGTCATGTCACACCTGGATAGGA
CTATTCTTGATAAGAAAGAGCTCTTGGAGTTTGCTCAACTTGGCTGCTACTTGGAATATGATCTCTTTGG
TACTGAACTACTTCATTACCAACTCGGCCCAGATATTGACATGCCTGATGATAACAAAAGAATTAGAAGG
GTGCGTCTCCTGGTGGAAGAGGGCTGTGAAGATCGAATTCTGGTAGCACATGACATACATACGAAAACCC
GGCTGATGAAATATGGAGGTCACGGCTATTCTCATATACTCACCAATGTTGTTCCTAAAATGTTGCTGAG
AGGCATAACTGAGAATGTGCTTGATAAGATTCTAATAGAGAACCCTAAGCAATGGCTAACTTTCAAATAG

Translation (349 aa):
MSSLSGKVQTVLGLVEPSKLGRTLTHEHLAMTFDCCYCPPPPCQEAISKEPIVMKNLYWIQKNAYSHKEN
LQLNQETEAIKEELLYFKANGGGALVENTTTGISRDTQTLKRLAEETGVHIISGAGFYVDATHSSETRAM
SVEQLTDVLMNEILHGADGTSIKCGIIGEIGCSWPLTESERKVLQATAHAQAQLGCPVIIHPGRSSRAPF
QIIRILQEAGADISKTVMSHLDRTILDKKELLEFAQLGCYLEYDLFGTELLHYQLGPDIDMPDDNKRIRR
VRLLVEEGCEDRILVAHDIHTKTRLMKYGGHGYSHILTNVVPKMLLRGITENVLDKILIENPKQWLTFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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