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Report for CCDS73038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73038.1 Public Homo sapiens 1 CAPN8 24 110 108 CCDS HistoryNCBI Gene:388743Re-query CCDS DB by CCDS ID:73038.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73038.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366872.10 ENSP00000355837.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366872.10Link to Ensembl Protein Viewer:ENSP00000355837.6Re-query CCDS DB by Nucleotide ID:ENST00000366872Re-query CCDS DB by Protein ID:ENSP00000355837
Original member Current member NCBI NM_001143962.2 NP_001137434.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143962.2Link to Protein Sequence:NP_001137434.1Re-query CCDS DB by Nucleotide ID:NM_001143962Re-query CCDS DB by Protein ID:NP_001137434Link to BLAST:NP_001137434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137434.1 703 A6NHC0 703 100% 0 0

Chromosomal Locations for CCDS 73038.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 223541836 223541859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223543108 223543166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223544067 223544183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223544772 223544850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223545231 223545299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223549318 223549382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223550960 223551017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223553832 223553900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223558131 223558167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223609153 223609364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223612246 223612257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223615970 223616145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223619293 223619453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223620192 223620266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223622815 223622900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223625805 223625888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223626989 223627157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223628009 223628142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223628662 223628780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223654330 223654399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223665410 223665646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2112 nt):
ATGGCAGCCCAGGCAGCTGGTGTATCTAGGCAGCGGGCAGCCACTCAAGGTCTTGGCTCCAACCAAAACG
CTTTGAAGTACTTGGGCCAGGATTTCAAGACCCTGAGGCAACAGTGCTTGGACTCAGGGGTCCTATTTAA
GGACCCTGAGTTCCCAGCATGTCCATCAGCTTTGGGCTACAAGGATCTTGGACCAGGCTCTCCGCAAACT
CAAGGCATCATCTGGAAGCGGCCCACGGAGTTGTGTCCCAGCCCTCAGTTTATCGTTGGTGGAGCCACGC
GCACAGACATTTGTCAGGGTGGTCTAGGTGACTGCTGGCTTCTGGCTGCCATTGCCTCCCTGACCCTGAA
TGAAGAGCTGCTTTACCGGGTGGTCCCCAGGGACCAGGACTTCCAGGAGAACTATGCGGGAATCTTTCAC
TTTCAGTTCTGGCAGTACGGAGAGTGGGTGGAGGTGGTCATTGACGACAGGCTGCCCACCAAGAATGGAC
AGCTGCTCTTCCTACACTCGGAACAAGGCAATGAATTCTGGAGTGCCCTGCTGGAGAAAGCCTATGCCAA
GCTTAATGGTTGTTATGAGGCTCTCGCTGGAGGTTCCACAGTGGAGGGGTTTGAGGATTTCACAGGTGGC
ATCTCTGAGTTTTATGACCTGAAGAAACCACCAGCCAATCTATATCAGATCATCCGGAAGGCCCTCTGTG
CGGGGTCTCTGCTGGGCTGCTCCATTGATGTCTCCAGTGCAGCCGAAGCCGAAGCCATCACCAGCCAGAA
GCTGGTTAAGAGTCATGCGTACTCTGTCACTGGAGTCGAAGAGGTGAATTTCCAGGGCCATCCAGAGAAG
CTGATCAGACTCAGGAATCCATGGGGTGAAGTGGAGTGGTCGGGAGCCTGGAGCGATGATGCACCAGAGT
GGAATCACATAGACCCCCGGCGGAAGGAAGAACTGGACAAGAAAGTTGAGGATGGAGAATTCTGGATGTC
ACTTTCAGATTTCGTGAGGCAGTTCTCTCGGTTGGAGATCTGCAACCTGTCCCCGGACTCTCTGAGTAGC
GAGGAGGTGCACAAATGGAACCTGGTCCTGTTCAACGGCCACTGGACCCGGGGCTCCACAGCTGGGGGCT
GCCAGAACTACCCAGCCACGTACTGGACCAATCCCCAGTTCAAAATCCGTTTGGATGAAGTGGATGAGGA
CCAGGAGGAGAGCATCGGTGAACCCTGCTGTACAGTGCTGCTGGGCCTGATGCAGAAAAATCGCAGGTGG
CGGAAGCGGATAGGACAAGGCATGCTTAGCATCGGCTATGCCGTCTACCAGGTTCCCAAGGAGCTGGAGA
GTCACACGGACGCACACTTGGGCCGGGATTTCTTCCTGGCCTACCAGCCCTCAGCCCGCACCAGCACCTA
CGTCAACCTGCGGGAGGTCTCTGGCCGGGCCCGGCTGCCCCCTGGGGAGTACCTGGTGGTGCCATCCACA
TTTGAACCCTTCAAAGACGGCGAGTTCTGCTTGAGAGTGTTCTCAGAGAAGAAGGCCCAGGCCCTAGAAA
TTGGGGATGTGGTAGCTGGAAACCCATATGAGCCACATCCCAGTGAGGTGGATCAGGAAGATGACCAGTT
CAGGAGGCTGTTTGAGAAGTTGGCAGGGAAGGATTCTGAGATTACTGCCAATGCACTCAAGATACTTTTG
AATGAGGCGTTTTCCAAGAGAACAGACATAAAATTCGATGGATTCAACATCAACACTTGCAGGGAAATGA
TCAGTCTGTTGGATAGCAATGGAACGGGCACTTTGGGGGCGGTGGAATTCAAGACGCTCTGGCTGAAGAT
TCAGAAGTATCTGGAGATCTATTGGGAAACTGATTATAACCACTCGGGCACCATCGATGCCCACGAGATG
AGGACAGCCCTCAGGAAGGCAGGTTTCACCCTCAACAGCCAGGTGCAGCAGACCATTGCCCTGCGGTATG
CGTGCAGCAAGCTTGGCATCAACTTTGACAGCTTCGTGGCTTGTATGATCCGCCTGGAGACCCTCTTCAA
ACTATTCAGCCTTCTGGACGAAGACAAGGATGGCATGGTTCAGCTCTCTCTGGCCGAGTGGCTGTGCTGC
GTGTTGGTCTGA

Translation (703 aa):
MAAQAAGVSRQRAATQGLGSNQNALKYLGQDFKTLRQQCLDSGVLFKDPEFPACPSALGYKDLGPGSPQT
QGIIWKRPTELCPSPQFIVGGATRTDICQGGLGDCWLLAAIASLTLNEELLYRVVPRDQDFQENYAGIFH
FQFWQYGEWVEVVIDDRLPTKNGQLLFLHSEQGNEFWSALLEKAYAKLNGCYEALAGGSTVEGFEDFTGG
ISEFYDLKKPPANLYQIIRKALCAGSLLGCSIDVSSAAEAEAITSQKLVKSHAYSVTGVEEVNFQGHPEK
LIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKVEDGEFWMSLSDFVRQFSRLEICNLSPDSLSS
EEVHKWNLVLFNGHWTRGSTAGGCQNYPATYWTNPQFKIRLDEVDEDQEESIGEPCCTVLLGLMQKNRRW
RKRIGQGMLSIGYAVYQVPKELESHTDAHLGRDFFLAYQPSARTSTYVNLREVSGRARLPPGEYLVVPST
FEPFKDGEFCLRVFSEKKAQALEIGDVVAGNPYEPHPSEVDQEDDQFRRLFEKLAGKDSEITANALKILL
NEAFSKRTDIKFDGFNINTCREMISLLDSNGTGTLGAVEFKTLWLKIQKYLEIYWETDYNHSGTIDAHEM
RTALRKAGFTLNSQVQQTIALRYACSKLGINFDSFVACMIRLETLFKLFSLLDEDKDGMVQLSLAEWLCC
VLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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