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Report for CCDS10638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10638.1 Public Homo sapiens 16 EIF3C 24 110 108 CCDS HistoryNCBI Gene:8663Re-query CCDS DB by CCDS ID:10638.1Re-query CCDS DB by GeneID:8663See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10638.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000331666.11 ENSP00000332604.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000331666.11Link to Ensembl Protein Viewer:ENSP00000332604.7Re-query CCDS DB by Nucleotide ID:ENST00000331666Re-query CCDS DB by Protein ID:ENSP00000332604
Original member Current member EBI ENST00000395587.5 ENSP00000378953.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395587.5Link to Ensembl Protein Viewer:ENSP00000378953.1Re-query CCDS DB by Nucleotide ID:ENST00000395587Re-query CCDS DB by Protein ID:ENSP00000378953
Original member Current member EBI ENST00000566866.5 ENSP00000457418.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000566866.5Link to Ensembl Protein Viewer:ENSP00000457418.1Re-query CCDS DB by Nucleotide ID:ENST00000566866Re-query CCDS DB by Protein ID:ENSP00000457418
Original member Current member EBI ENST00000566501.5 ENSP00000457963.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000566501.5Link to Ensembl Protein Viewer:ENSP00000457963.1Re-query CCDS DB by Nucleotide ID:ENST00000566501Re-query CCDS DB by Protein ID:ENSP00000457963
Original member Current member NCBI NM_001037808.2 NP_001032897.1 Accepted alive Link to Nucleotide Sequence:NM_001037808.2Link to Protein Sequence:NP_001032897.1Re-query CCDS DB by Nucleotide ID:NM_001037808Re-query CCDS DB by Protein ID:NP_001032897Link to BLAST:NP_001032897.1
Original member Current member NCBI NM_001199142.1 NP_001186071.1 Accepted alive Link to Nucleotide Sequence:NM_001199142.1Link to Protein Sequence:NP_001186071.1Re-query CCDS DB by Nucleotide ID:NM_001199142Re-query CCDS DB by Protein ID:NP_001186071Link to BLAST:NP_001186071.1
Original member Current member NCBI NM_001267574.2 NP_001254503.1 Accepted alive Link to Nucleotide Sequence:NM_001267574.2Link to Protein Sequence:NP_001254503.1Re-query CCDS DB by Nucleotide ID:NM_001267574Re-query CCDS DB by Protein ID:NP_001254503Link to BLAST:NP_001254503.1
Original member Current member NCBI NM_003752.5 NP_003743.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003752.5Link to Protein Sequence:NP_003743.1Re-query CCDS DB by Nucleotide ID:NM_003752Re-query CCDS DB by Protein ID:NP_003743Link to BLAST:NP_003743.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032897.1 913 Q99613-1 913 100% 0 0
NP_001186071.1 913 Q99613-1 913 100% 0 0
NP_001254503.1 913 Q99613-1 913 100% 0 0
NP_003743.1 913 Q99613-1 913 100% 0 0

Chromosomal Locations for CCDS 10638.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28711687 28711787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28713701 28713766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28713909 28714098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28714321 28714446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28714636 28714690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28714819 28714928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28715307 28715434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28723164 28723323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28723448 28723551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28724322 28724463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28724658 28724783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28724919 28725012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28726605 28726795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28727021 28727245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28731829 28732192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28734520 28734679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28734778 28734843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28734932 28735019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28735173 28735335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28735431 28735513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGTCGCGGTTTTTCACCACCGGTTCGGACAGCGAGTCCGAGTCGTCCTTGTCCGGGGAGGAGCTCGTCA
CCAAACCTGTCGGAGGCAACTATGGCAAACAGCCATTGTTGCTGAGCGAGGATGAAGAAGATACCAAGAG
AGTTGTCCGCAGTGCCAAGGACAAGAGGTTTGAGGAGCTGACCAACCTTATCCGGACCATCCGTAATGCC
ATGAAGATTCGTGATGTCACCAAGTGCCTGGAAGAGTTTGAGCTCCTGGGAAAAGCATATGGGAAGGCCA
AAAGCATTGTGGACAAAGAAGGTGTCCCCCGGTTCTATATCCGCATCCTGGCTGACCTAGAGGACTATCT
TAATGAGCTTTGGGAAGATAAGGAAGGGAAGAAGAAGATGAACAAGAACAATGCCAAGGCTCTGAGCACC
TTGCGTCAGAAGATCCGAAAATACAACCGTGATTTCGAGTCCCATATCACAAGCTACAAGCAGAACCCCG
AGCAGTCTGCGGATGAAGATGCTGAGAAAAATGAGGAGGATTCAGAAGGCTCTTCAGATGAGGATGAGGA
TGAGGACGGAGTCAGTGCTGCAACTTTCTTGAAGAAGAAATCAGAAGCTCCTTCTGGGGAGAGTCGCAAG
TTCCTCAAAAAGATGGATGATGAAGATGAGGACTCAGAAGATTCCGAAGATGATGAAGACTGGGACACAG
GTTCCACATCTTCCGATTCCGACTCAGAGGAGGAAGAAGGGAAACAAACCGCGCTGGCCTCAAGATTTCT
TAAAAAGGCACCCACCACAGATGAGGACAAGAAGGCAGCCGAGAAGAAACGGGAGGACAAAGCTAAGAAG
AAGCACGACAGGAAATCCAAGCGCCTGGATGAGGAGGAGGAGGACAATGAAGGCGGGGAGTGGGAAAGGG
TCCGGGGCGGAGTGCCGTTGGTTAAGGAGAAGCCAAAAATGTTTGCCAAGGGAACTGAGATCACCCATGC
TGTTGTTATCAAGAAACTGAATGAGATCCTACAGGCACGAGGCAAGAAGGGAACTGATCGTGCTGCCCAG
ATTGAGCTGCTGCAACTGCTGGTTCAGATTGCAGCGGAAAACAACCTGGGAGAGGGCGTCATTGTCAAGA
TCAAGTTCAATATCATCGCCTCTCTCTATGACTACAACCCCAACCTGGCAACCTACATGAAGCCAGAGAT
GTGGGGGAAGTGCCTGGACTGCATCAATGAGCTGATGGATATCCTGTTTGCAAATCCCAACATTTTTGTT
GGAGAGAATATTCTGGAAGAGAGTGAGAACCTGCACAACGCTGACCAGCCACTGCGTGTCCGTGGCTGCA
TCCTAACTCTGGTGGAACGAATGGATGAAGAATTTACCAAAATAATGCAAAATACTGACCCTCACTCCCA
AGAGTACGTGGAGCACTTGAAGGATGAGGCCCAGGTGTGTGCCATCATCGAGCGTGTGCAGCGCTACCTG
GAGGAGAAGGGCACTACCGAGGAGGTCTGCCGCATCTACCTGCTGCGCATCCTGCACACCTACTACAAGT
TTGATTACAAGGCCCATCAGCGACAGCTGACCCCGCCTGAGGGCTCCTCAAAGTCTGAGCAAGACCAGGC
AGAAAATGAGGGCGAGGACTCGGCTGTGTTGATGGAGAGACTGTGCAAGTACATCTACGCCAAGGACCGC
ACAGACCGGATCCGCACATGTGCCATCCTCTGCCACATCTACCACCATGCTCTGCACTCGCGCTGGTACC
AGGCCCGCGACCTCATGCTCATGAGCCACTTGCAGGACAACATTCAGCATGCAGACCCGCCAGTGCAGAT
CCTTTACAACCGCACCATGGTGCAGCTGGGCATCTGTGCCTTCCGCCAAGGCCTGACCAAGGACGCACAC
AACGCCCTGCTGGACATCCAGTCGAGTGGCCGAGCCAAGGAGCTTCTGGGCCAGGGCCTGCTGCTGCGCA
GCCTGCAGGAGCGCAACCAGGAGCAGGAGAAGGTGGAGCGGCGCCGTCAGGTCCCCTTCCACCTGCACAT
CAACCTGGAGCTGCTGGAGTGTGTCTACCTGGTGTCTGCCATGCTCCTGGAGATCCCCTACATGGCCGCC
CATGAGAGCGATGCCCGCCGACGCATGATCAGCAAGCAGTTCCACCACCAGCTGCGCGTGGGCGAGCGAC
AGCCCCTGCTGGGTCCCCCTGAGTCCATGCGGGAACATGTGGTCGCTGCCTCCAAGGCCATGAAGATGGG
TGACTGGAAGACCTGTCACAGTTTTATCATCAATGAGAAGATGAATGGGAAAGTGTGGGACCTTTTCCCC
GAGGCTGACAAAGTCCGCACCATGCTGGTTAGGAAGATCCAGGAAGAGTCACTGAGGACCTACCTCTTCA
CCTACAGCAGTGTCTATGACTCCATCAGCATGGAGACGCTGTCAGACATGTTTGAGCTGGATCTGCCCAC
TGTGCACTCCATCATCAGCAAAATGATCATTAATGAGGAGCTGATGGCCTCCCTGGACCAGCCAACACAG
ACAGTGGTGATGCACCGCACTGAGCCCACTGCCCAGCAGAACCTGGCTCTGCAGCTGGCCGAGAAGCTGG
GCAGCCTGGTGGAGAACAACGAACGGGTGTTTGACCACAAGCAGGGCACCTACGGGGGCTACTTCCGAGA
CCAGAAGGACGGCTACCGCAAAAACGAGGGCTACATGCGCCGCGGTGGCTACCGCCAGCAGCAGTCTCAG
ACGGCCTACTGA

Translation (913 aa):
MSRFFTTGSDSESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNA
MKIRDVTKCLEEFELLGKAYGKAKSIVDKEGVPRFYIRILADLEDYLNELWEDKEGKKKMNKNNAKALST
LRQKIRKYNRDFESHITSYKQNPEQSADEDAEKNEEDSEGSSDEDEDEDGVSAATFLKKKSEAPSGESRK
FLKKMDDEDEDSEDSEDDEDWDTGSTSSDSDSEEEEGKQTALASRFLKKAPTTDEDKKAAEKKREDKAKK
KHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKMFAKGTEITHAVVIKKLNEILQARGKKGTDRAAQ
IELLQLLVQIAAENNLGEGVIVKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFV
GENILEESENLHNADQPLRVRGCILTLVERMDEEFTKIMQNTDPHSQEYVEHLKDEAQVCAIIERVQRYL
EEKGTTEEVCRIYLLRILHTYYKFDYKAHQRQLTPPEGSSKSEQDQAENEGEDSAVLMERLCKYIYAKDR
TDRIRTCAILCHIYHHALHSRWYQARDLMLMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAH
NALLDIQSSGRAKELLGQGLLLRSLQERNQEQEKVERRRQVPFHLHINLELLECVYLVSAMLLEIPYMAA
HESDARRRMISKQFHHQLRVGERQPLLGPPESMREHVVAASKAMKMGDWKTCHSFIINEKMNGKVWDLFP
EADKVRTMLVRKIQEESLRTYLFTYSSVYDSISMETLSDMFELDLPTVHSIISKMIINEELMASLDQPTQ
TVVMHRTEPTAQQNLALQLAEKLGSLVENNERVFDHKQGTYGGYFRDQKDGYRKNEGYMRRGGYRQQQSQ
TAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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