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Report for CCDS48059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48059.1 Public Homo sapiens 9 AJM1 24 110 108 CCDS HistoryNCBI Gene:389813Re-query CCDS DB by CCDS ID:48059.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48059.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436881.3 ENSP00000412388.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436881.3Link to Ensembl Protein Viewer:ENSP00000412388.1Re-query CCDS DB by Nucleotide ID:ENST00000436881Re-query CCDS DB by Protein ID:ENSP00000412388
Original member Current member NCBI NM_001080482.5 NP_001073951.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080482.5Link to Protein Sequence:NP_001073951.2Re-query CCDS DB by Nucleotide ID:NM_001080482Re-query CCDS DB by Protein ID:NP_001073951Link to BLAST:NP_001073951.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073951.2 976 C9J069 976 100% 0 0

Chromosomal Locations for CCDS 48059.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 136844415 136847345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2931 nt):
ATGACCCGTACGGACCCTCCGGACCTGCTGGTGTCGACCGTGTACCAGGACATCAAGGTGGCGACCCCGG
GACCCGCGTCCAAGTGCTCGCCATGTGAGCGATCCGTGGCCCGGCCTGCTGAGCCCGCGCCTTTCAACAA
GCGCCACTGCCGCAGCTTCGACTTCCTGGAGGCGCTGGACGGGCCGGCCATGGAGACCCTGCCGGAGCCA
CCGCCGCCGGAGTCCGCTGTGCCGCGCGCCCGGACCCGCGAAGCCGAGCCACGCCGCCGCGCCCGCTCCA
AGAGTGCGCCCCGCGCGCCCCCGGGCCTGACGCCCGCGCCCGCCTCGCCGCCGGTGTTGCCCCGCCGAGG
GCGGGAGGCCCAGCGTGCGGCGCGGGCCGAGGCATCGCCGCGCCGGGAGCCCGCGTACCCGGCGCTCCGC
GCCCTTGCCAACGAGCTGCATCCCATCAAGTTGCAGCCGCAGCGGGGCGGCCCCGGCCGCGTCGCGCCCC
TGTGCGCCGCCGCGGGCCGCTGCGCACCGCCCGAGCCACCCGCGGGTCCCGCCCCCCACGTGCGCTGCCG
CCTGGACATCAAGCCAGACGACGCAGTGCTCCAGCACGCCACCCGGGGCTCGCGGTCCTGCGGGCCCACC
GAGGCCGCGCACTGGGCCCGCCCCGCCCCGCAGTTCCACGGCCTCACGGTGCCCGGGCCCCGCCACATGG
CGCTGTCGCGCACCCCGACGCCCAGCGACTCATACTGTGCGGATCCCCGGGCGTTCTACTGCGACGGGCC
CCTGCCTGGGCCCCGGGACTACGCCGAGCGCCGCAGTCTGCCCTTCACCACCCCGCCGGGCCCCACCCAG
TTCTTCTATACAGAGGAGCCCCAAGGCTTCCGGGGCAGCTTTGCAGCCAGTCCCGGCCCAACCTTCGACG
CCTACTACCCCAGGCCCTATCCGTCCGAGGAGCTCTCGGGGCCCAGTCCAAGGCGCATGGGCGGCTACTA
CGCAGGAGAGGTGCGCACCTTCCCAATCCAGGAACCGCCCTCCCGCTCCTACTATGGGGAGGCTCCACGA
GCCTACGGCCTGCCCTACGGGCCCCGCTATGTCCCCGAGGAGCCCCGGGCCCACTCCACCGCCCGCCCCT
TTTACACGGAGGACTTCGGAAGGTACCGCGAGCGTGACGTCCTGGCTCGGACGTACCCGCACCCGCGCAG
CAGCCCGGCCTGGGCGGACTGGGGCCCGCGACCGTACCGCACCCTGCAAGTGGTGCCGCCCTCTGACCCC
GACCCGTTGCTCGCCTCCTGGCACGGCGGCACCGGCACCAGTCCGCCCCGGCTGGCCACCGACAGCCGCC
ACTACTCGCGCTCCTGGGACAACATTCTGGCCCCGGGGCCGCGCCGAGAAGACCCGTTGGGCCGCGGCCG
CAGCTACGAGAACCTGCTGGGGCGCGAGGTGCGGGAGCCGCGAGGCGTGTCCCCCGAAGGCCGGCGCCCG
CCCGTCGTCGTGAACCTGTCCACCTCTCCCAGACGCTACGCCGCACTGTCCCTGTCCGAGACGTCGCTGA
CGGAGAAGGGCCGCGCGGGCGAGGGCCTGGGCCGCAACTGGTACGTGACGCCCGAGATCACCATCACTGA
CAATGACCTGCGCGCCACCGAGCGCCCGAGCGCCAGGGCCTGGGAGTTGCCCGGGGGCCGCACGCGGCCA
CCTCCCCACGCGGCCCCCGACGGCCCCACCTCTGGCCGCCAGCGGAGCCTAGAGCAGCTGGACGAGCTCA
TCACGGACCTGGTCATCGACTCGCGACCCACCGCCGGCCAGGCCTCAGAGCCCGCGGCCGACTGCCTGGG
CCCCCAACTGCGCCGACTGCTGGACTCGCGGCCCGCGGGCTCCGGGGCCCCCGCGCTGGCGCCGCCACGC
TCGCCCCCCGCCTCGGCCGGCAGCGCCGAGGAGCCCGCGGCCCCGGGAGAGGCGGCCGACGCGTCCCCCG
AACCCAGCGCCGACGAGGACGACCTGATGACCTGCTCCAATGCGCGCTGCCGGCGCACCGAGACCATGTT
CAACGCCTGCCTCTACTTCAAGTCCTGCCACAGCTGCTACACCTACTACTGCTCGCGCCTGTGCCGCCGC
GAGGACTGGGACGCCCACAAGGCGCGCTGCGTGTACGGCCGCGTGGGCAGCGTGTGCCGCCACGTACTGC
AGTTTTGCCGCGACAGCGGCCCGGTGCACCGCGCTTTCTCGCGCATCGCGCGTGTCGGCTTCCTGTCGCG
CGGCCGCGGCGTGCTCTTCCTGGGCTTCCCAAGTCCAGGCTCGGCCGACAACTTCCTGCGCTTTGGCCTG
GAGGGGCTGCTGCTATCCCCCACCTACCTATCGCTGCGTGAGCTGGCCACACACGCGGCGCCCCTGGGCA
GCTACGCGCGCGAGCTGGCGGCCGCTGGGCGCCTCTACGAACCGGCAGAGTGCTTCCTGCTCAGCGTGTC
CGTGGCCGTGGGACCCGGCACCGCGCCACCGGGGACACCGGCCCTGCCCGCGCCCGCGCCACGCAGCCAC
GGGCCAACAGTGCGCAAGTTCGCCAAGGTAGCGCTGGCGGCCGGCAGCCCCGCGCGGCCGCCCCCGGCGC
GGAGCCGCGAGCCCGACATGGAGACGCTGATCCTGACGCCACCGCCGGGCACGGCGGGCCTGGATCAGGA
CGGCGAGGCGGGCCGGCGCGCGCGCGAGGTGGCCTTCATCCACATCCAGCGCGAGCTGCGGCTGCGCGGC
GTCTTCCTGCGCCACGAGTTCCCGCGCGTCTACGAGCAGCTTTGCGAGTTCGTCGAGGCCAACAGGCGCT
TCACGCCCACCACCATCTACCCCACGGACCGGCGCACCGGCCGCCCCTTCATGTGCATGATCATGGCCGC
CTCCGAGCCGCGCGCGCTCGACTGGGTGGCCAGCGCCAACCTGCTGGACGACATCATGTGA

Translation (976 aa):
MTRTDPPDLLVSTVYQDIKVATPGPASKCSPCERSVARPAEPAPFNKRHCRSFDFLEALDGPAMETLPEP
PPPESAVPRARTREAEPRRRARSKSAPRAPPGLTPAPASPPVLPRRGREAQRAARAEASPRREPAYPALR
ALANELHPIKLQPQRGGPGRVAPLCAAAGRCAPPEPPAGPAPHVRCRLDIKPDDAVLQHATRGSRSCGPT
EAAHWARPAPQFHGLTVPGPRHMALSRTPTPSDSYCADPRAFYCDGPLPGPRDYAERRSLPFTTPPGPTQ
FFYTEEPQGFRGSFAASPGPTFDAYYPRPYPSEELSGPSPRRMGGYYAGEVRTFPIQEPPSRSYYGEAPR
AYGLPYGPRYVPEEPRAHSTARPFYTEDFGRYRERDVLARTYPHPRSSPAWADWGPRPYRTLQVVPPSDP
DPLLASWHGGTGTSPPRLATDSRHYSRSWDNILAPGPRREDPLGRGRSYENLLGREVREPRGVSPEGRRP
PVVVNLSTSPRRYAALSLSETSLTEKGRAGEGLGRNWYVTPEITITDNDLRATERPSARAWELPGGRTRP
PPHAAPDGPTSGRQRSLEQLDELITDLVIDSRPTAGQASEPAADCLGPQLRRLLDSRPAGSGAPALAPPR
SPPASAGSAEEPAAPGEAADASPEPSADEDDLMTCSNARCRRTETMFNACLYFKSCHSCYTYYCSRLCRR
EDWDAHKARCVYGRVGSVCRHVLQFCRDSGPVHRAFSRIARVGFLSRGRGVLFLGFPSPGSADNFLRFGL
EGLLLSPTYLSLRELATHAAPLGSYARELAAAGRLYEPAECFLLSVSVAVGPGTAPPGTPALPAPAPRSH
GPTVRKFAKVALAAGSPARPPPARSREPDMETLILTPPPGTAGLDQDGEAGRRAREVAFIHIQRELRLRG
VFLRHEFPRVYEQLCEFVEANRRFTPTTIYPTDRRTGRPFMCMIMAASEPRALDWVASANLLDDIM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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