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Report for CCDS53597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53597.1 Public Homo sapiens 11 OR52E6 24 110 108 CCDS HistoryNCBI Gene:390078Re-query CCDS DB by CCDS ID:53597.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53597.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000329322.5 ENSP00000328878.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000329322.5Link to Ensembl Protein Viewer:ENSP00000328878.5Re-query CCDS DB by Nucleotide ID:ENST00000329322Re-query CCDS DB by Protein ID:ENSP00000328878
Original member Current member NCBI NM_001005167.2 NP_001005167.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005167.2Link to Protein Sequence:NP_001005167.1Re-query CCDS DB by Nucleotide ID:NM_001005167Re-query CCDS DB by Protein ID:NP_001005167Link to BLAST:NP_001005167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005167.1 313 Q96RD3 313 100% 0 0

Chromosomal Locations for CCDS 53597.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5840956 5841897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCCTATAGCTAACGACACCCAGTTCCATACTTCTTCATTCCTACTGCTGGGTATCCCAGGGCTAGAAG
ATGTGCACATCTGGATTGGATTCCCTTTTTTCTCTGTGTATCTTATTGCACTCCTGGGAAATGCTGCTAT
CTTCTTTGTGATCCAAACTGAGCAGAGTCTCCATGAGCCCATGTACTACTGCCTGGCCATGTTGGATTCC
ATTGACCTGAGCTTGTCTACGGCCACCATTCCCAAAATGCTGGGCATCTTCTGGTTCAATATCAAGGAAA
TATCTTTTGGAGGCTACCTTTCTCAGATGTTCTTCATCCATTTCTTCACTGTCATGGAGAGCATCGTATT
GGTGGCCATGGCCTTTGACCGCTACATTGCCATTTGCAAACCTCTTTGGTACACCATGATCCTCACCAGC
AAAATCATCAGCCTCATTGCAGGCATTGCTGTCCTGAGGAGCTTGTACATGGTCATTCCACTGGTGTTTC
TCCTCTTAAGGTTGCCCTTCTGTGGACATCGTATCATCCCTCATACTTACTGTGAGCACATGGGCATTGC
CCGTCTGGCCTGTGCCAGCATCAAAGTCAACATTATGTTTGGTCTTGGCAGTATTTCTCTCTTGTTATTG
GATGTGCTCCTTATTATTCTCTCCCATATCAGGATCCTCTATGCTGTCTTCTGCCTGCCCTCCTGGGAAG
CTCGACTCAAAGCTCTCAACACCTGTGGCTCTCACATTGGTGTTATCTTAGCCTTTTCTACACCAGCATT
TTTCTCTTTCTTTACACACTGCTTTGGCCATGATATTCCCCAATATATCCACATTTTCTTGGCTAATCTA
TATGTGGTTGTTCCTCCCACCCTCAATCCTGTAATCTATGGGGTCAGAACCAAACATATTAGGGAGACAG
TGCTGAGGATTTTCTTCAAGACAGATCACTAA

Translation (313 aa):
MPIANDTQFHTSSFLLLGIPGLEDVHIWIGFPFFSVYLIALLGNAAIFFVIQTEQSLHEPMYYCLAMLDS
IDLSLSTATIPKMLGIFWFNIKEISFGGYLSQMFFIHFFTVMESIVLVAMAFDRYIAICKPLWYTMILTS
KIISLIAGIAVLRSLYMVIPLVFLLLRLPFCGHRIIPHTYCEHMGIARLACASIKVNIMFGLGSISLLLL
DVLLIILSHIRILYAVFCLPSWEARLKALNTCGSHIGVILAFSTPAFFSFFTHCFGHDIPQYIHIFLANL
YVVVPPTLNPVIYGVRTKHIRETVLRIFFKTDH


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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