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Report for CCDS15143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15143.1 Public Mus musculus 1 Ugt1a1 23 108 98 CCDS HistoryNCBI Gene:394436Re-query CCDS DB by CCDS ID:15143.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073049.6 ENSMUSP00000072803.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073049.6Link to Ensembl Protein Viewer:ENSMUSP00000072803.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073049Re-query CCDS DB by Protein ID:ENSMUSP00000072803
Original member Current member NCBI NM_201645.2 NP_964007.2 Accepted alive Link to Nucleotide Sequence:NM_201645.2Link to Protein Sequence:NP_964007.2Re-query CCDS DB by Nucleotide ID:NM_201645Re-query CCDS DB by Protein ID:NP_964007Link to BLAST:NP_964007.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_964007.2 535 Q63886-1 535 100% 0 0

Chromosomal Locations for CCDS 15143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 88212002 88212871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88215044 88215175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88215795 88215882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88216138 88216357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 88218127 88218424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGACTGTGGTGTGCTGGAGCTCGCGTTTGCTTCTGCTTCTTCCGTACCTTCTGTTGTGTGTGTTCGGTC
CCTCTGCATCCCACGCTGGGAGGCTGTTAGTGTTCCCTATGGATGGAAGCCACTGGCTGAGTATGCTTGG
AGTTATTCAGCAGCTCCAGCAGAAGGGGCACGAAGTTGTGGTCATAGCACCTGAAGCCTCAATACACATA
AAAGAAGGATCATTTTACACTCTGAGGAAGTTCCCTGTGCCATTCCAGAAGGAAAATGTGACAGCTACTT
TGGTGGAACTTGGACGGACTGCCTTTAATCAAGATTCTTTTCTGCTGCGCGTGGTCAAAATATATATGAA
AGTCAAAAGGGATTCCAGTATGCTCCTAGCTGGCTGCTCCCACCTGCTGCACAATGCCGAGTTTATGGCC
TCTCTGGAAGAAAGTCACTTTGATGCTCTGCTGACAGACCCTTTCCTTCCCTGTGGCTCCATTGTGGCCC
AGTACCTGACTGTGCCCACTGTGTACTTCTTGAATAAATTGCCATGCAGCCTGGATTCAGAAGCTACCCA
ATGCCCCGTCCCATTGTCCTACGTGCCCAAGAGTTTGTCTTTCAACTCAGACCGCATGAACTTCCTACAG
CGAGTGAAGAACGTGCTCCTGGCCGTGTCAGAGAACTTTATGTGCAGAGTGGTTTATTCCCCCTATGGGT
CACTTGCCACTGAAATCTTACAGAAAGAAGTGACTGTCCAGGATCTTCTGAGCCCTGCATCTATCTGGCT
GATGAGAAGTGACTTTGTGAAAGATTACCCCAGGCCCATCATGCCCAACATGGTTTTTATTGGTGGTATA
AATTGCCTTCAGAAAAAGCCCCTATCCCAGGAATTTGAAGCCTATGTCAACGCCTCTGGGGAGCATGGCA
TCGTTGTTTTCTCTTTGGGATCCATGGTCTCAGAGATTCCGGAGAAGAAAGCCATGGAAATTGCTGAGGC
TTTGGGCAGAATTCCTCAGACGGTCCTGTGGCGCTACACCGGAACTAGACCATCGAATCTTGCAAAGAAC
ACAATTCTTGTCAAATGGCTACCCCAAAATGATCTGCTTGGTCATCCAAAGACTCGGGCATTCATCACAC
ACTCTGGCTCCCATGGTATTTATGAAGGAATATGCAATGGAGTTCCGATGGTGATGATGCCCCTATTTGG
CGATCAGATGGACAATGCCAAGCGCATGGAAACTCGGGGAGCTGGGGTGACCCTGAATGTCCTTGAAATG
ACTGCTGATGATTTGGAAAATGCCCTTAAAACTGTCATCAACAACAAGAGCTACAAGGAGAACATCATGC
GCCTCTCCAGCCTTCACAAGGACCGTCCTATAGAGCCTCTGGACCTGGCTGTGTTCTGGGTGGAATACGT
GATGAGGCACAAGGGGGCACCACACCTGCGCCCGGCCGCCCATGACCTCACCTGGTATCAGTACCACTCC
TTGGATGTGATTGGCTTCCTCCTGGCCATTGTGTTGACAGTGGTCTTCATTGTCTTTAAATGTTGTGCCT
ATGGCTGCCGGAAATGCTTTGGGGGAAAGGGGCGAGTGAAGAAATCACACAAATCCAAGACCCATTGA

Translation (535 aa):
MTVVCWSSRLLLLLPYLLLCVFGPSASHAGRLLVFPMDGSHWLSMLGVIQQLQQKGHEVVVIAPEASIHI
KEGSFYTLRKFPVPFQKENVTATLVELGRTAFNQDSFLLRVVKIYMKVKRDSSMLLAGCSHLLHNAEFMA
SLEESHFDALLTDPFLPCGSIVAQYLTVPTVYFLNKLPCSLDSEATQCPVPLSYVPKSLSFNSDRMNFLQ
RVKNVLLAVSENFMCRVVYSPYGSLATEILQKEVTVQDLLSPASIWLMRSDFVKDYPRPIMPNMVFIGGI
NCLQKKPLSQEFEAYVNASGEHGIVVFSLGSMVSEIPEKKAMEIAEALGRIPQTVLWRYTGTRPSNLAKN
TILVKWLPQNDLLGHPKTRAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEM
TADDLENALKTVINNKSYKENIMRLSSLHKDRPIEPLDLAVFWVEYVMRHKGAPHLRPAAHDLTWYQYHS
LDVIGFLLAIVLTVVFIVFKCCAYGCRKCFGGKGRVKKSHKSKTH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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