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Report for CCDS8214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8214.1 Public Homo sapiens 11 PHOX2A 24 110 108 CCDS HistoryNCBI Gene:401Re-query CCDS DB by CCDS ID:8214.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8214.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000298231.5 ENSP00000298231.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000298231.5Link to Ensembl Protein Viewer:ENSP00000298231.5Re-query CCDS DB by Nucleotide ID:ENST00000298231Re-query CCDS DB by Protein ID:ENSP00000298231
Original member Current member NCBI NM_005169.4 NP_005160.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005169.4Link to Protein Sequence:NP_005160.2Re-query CCDS DB by Nucleotide ID:NM_005169Re-query CCDS DB by Protein ID:NP_005160Link to BLAST:NP_005160.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005160.2 284 O14813 284 100% 0 0

Chromosomal Locations for CCDS 8214.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72239749 72240198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72241102 72241289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72243788 72244004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGACTACTCCTACCTCAATTCGTACGACTCGTGCGTGGCGGCCATGGAGGCGTCCGCCTACGGCGACT
TTGGCGCCTGCAGCCAGCCCGGCGGCTTCCAATACAGCCCCCTGCGGCCCGCTTTCCCCGCGGCAGGGCC
GCCCTGCCCCGCGCTCGGCTCCTCCAACTGCGCACTTGGCGCCCTACGCGACCACCAGCCCGCGCCCTAC
TCGGCAGTGCCCTACAAGTTCTTCCCAGAGCCATCCGGCCTGCACGAGAAGCGCAAGCAGCGGCGCATCC
GCACCACGTTCACCAGCGCGCAGCTCAAGGAGCTGGAGCGCGTTTTCGCTGAGACCCACTACCCCGACAT
TTACACGCGTGAGGAGCTGGCGCTCAAGATCGACCTCACTGAGGCTCGCGTGCAGGTCTGGTTCCAGAAC
CGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAGGGCGCGGCGGGCGCGGCGGGCGCCA
AAAAGGGCGAGGCGCGCTGCTCCTCCGAGGACGACGATTCCAAGGAGTCCACGTGCAGCCCCACGCCCGA
TAGCACCGCCTCGCTGCCGCCGCCGCCTGCGCCCGGCCTGGCCAGCCCGCGCCTGAGCCCCAGCCCGCTG
CCCGTCGCACTGGGCTCCGGGCCGGGACCTGGGCCGGGGCCACAGCCGCTCAAGGGCGCACTGTGGGCCG
GTGTGGCGGGCGGTGGGGGCGGCGGGCCTGGCGCGGGAGCGGCCGAACTACTTAAGGCTTGGCAGCCGGC
GGAGTCCGGCCCCGGGCCCTTCTCCGGGGTTCTGTCCTCCTTTCACCGGAAGCCCGGCCCCGCCCTGAAG
ACCAATCTCTTCTAG

Translation (284 aa):
MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAPY
SAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQN
RRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPL
PVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALK
TNLF


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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