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Report for CCDS35102.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35102.2 Public Homo sapiens 9 C9orf152 24 110 108 CCDS HistoryNCBI Gene:401546Re-query CCDS DB by CCDS ID:35102.2See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35102.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400613.5 ENSP00000383456.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000400613.5Link to Ensembl Protein Viewer:ENSP00000383456.4Re-query CCDS DB by Nucleotide ID:ENST00000400613Re-query CCDS DB by Protein ID:ENSP00000383456
Original member Current member NCBI NM_001012993.3 NP_001013011.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012993.3Link to Protein Sequence:NP_001013011.2Re-query CCDS DB by Nucleotide ID:NM_001012993Re-query CCDS DB by Protein ID:NP_001013011Link to BLAST:NP_001013011.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013011.2 239 Q5JTZ5 239 100% 0 0

Chromosomal Locations for CCDS 35102.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110200948 110201474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110207387 110207579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (720 nt):
ATGGAGGGGTTGCCCTGCCCGTGCCCAGCCCTGCCCCACTTCTGGCAGCTTAGGTCTCACTTAATGGCTG
AGGGCTCCAGGACTCAGGCCCCTGGGAAAGGGCCCCCACTCAGCATCCAGTTCCTGCGAGCCCAGTATGA
AGGCTTGAAGAGGCAGCAGAGGACCCAGGCCCACCTCCTGGTGCTTCCAAAAGGAGGAAACACACCTGCT
CCTGCAGAATCGATGGTCAATGCTGTTTGGATTAACAAGGAGAGAAGAAGCTCACTGTCCCTGGAAGAGG
CAGATTCTGAGGTGGAGGGGAGGCTGGAGGAGGCTGCCCAGGGCTGCCTTCAGGCCCCCAAGTCTCCATG
GCACACGCACCTGGAGATGCATTGTTTGGTCCAAACCTCCCCCCAGGACACCAGTCATCAAGTACATCAT
AGGGGCAAGCTTGTGGGATCTGATCAAAGGCTCCCTCCTGAAGGAGACACACACTTGTTTGAAACCAATC
AGATGACTCAGCAAGGAACCGGAATCCCAGAGGCTGCCCAGCTTCCATGCCAGGTGGGCAATACCCAAAC
AAAGGCAGTGGAATCTGGCTTAAAATTCAGCACTCAATGTCCTCTTTCCATAAAGAACCCACACAGGTCT
GGCAAACCAGCTTACTATCCATTTCCCCAGAGGAAAACACCCAGGATCTCCCAAGCTGCCCGGAACCTGG
GCTTATATGGCTCAGCGTGA

Translation (239 aa):
MEGLPCPCPALPHFWQLRSHLMAEGSRTQAPGKGPPLSIQFLRAQYEGLKRQQRTQAHLLVLPKGGNTPA
PAESMVNAVWINKERRSSLSLEEADSEVEGRLEEAAQGCLQAPKSPWHTHLEMHCLVQTSPQDTSHQVHH
RGKLVGSDQRLPPEGDTHLFETNQMTQQGTGIPEAAQLPCQVGNTQTKAVESGLKFSTQCPLSIKNPHRS
GKPAYYPFPQRKTPRISQAARNLGLYGSA


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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