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Report for CCDS21380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21380.1 Public Mus musculus 7 Abhd2 23 108 98 CCDS HistoryNCBI Gene:54608Re-query CCDS DB by CCDS ID:21380.1Re-query CCDS DB by GeneID:54608See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037315.12 ENSMUSP00000038361.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037315.12Link to Ensembl Protein Viewer:ENSMUSP00000038361.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000037315Re-query CCDS DB by Protein ID:ENSMUSP00000038361
Original member Current member NCBI NM_018811.6 NP_061281.3 Accepted alive Link to Nucleotide Sequence:NM_018811.6Link to Protein Sequence:NP_061281.3Re-query CCDS DB by Nucleotide ID:NM_018811Re-query CCDS DB by Protein ID:NP_061281Link to BLAST:NP_061281.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061281.3 425 Q9QXM0 425 100% 0 0

Chromosomal Locations for CCDS 21380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79297014 79297207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79323469 79323644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79325434 79325601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79348260 79348443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79350751 79350843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79353990 79354100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79355802 79355871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79358065 79358149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79359960 79360156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGAATGCCATGCTAGAGACCCCCGAGCTCCCCGCCGTGTTTGATGGGGTGAAGCTGGCTGCCGTAGCTG
CCGTTCTCTACGTCATCGTGCGGTGTTTGAACCTGAAGAGCCCTACTGCCCCTCCTGACCTCTACTTCCA
GGACTCCGGGCTCTCACGTTTCCTGCTCAAATCCTGTCCTCTTCTGACCAAAGAATACATTCCACCACTG
ATCTGGGGGAAAAGCGGACATATCCAGACAGCCTTGTATGGGAAGATGGGGAGGGTGAGGTCACCACACC
CTTACGGGCACCGCAAGTTCATCACCATGTCGGATGGTGCCACTTCTACCTTCGACCTCTTCGAGCCCCT
GGCTGAGCACTGTGTTGGAGATGACATCACCATGGTCATCTGTCCTGGAATTGCCAACCACAGCGAGAAG
CAGTATATCCGAACCTTCGTTGACTATGCCCAGAAAAATGGCTACCGGTGCGCAGTGCTAAACCACCTGG
GAGCCCTCCCCAACATTGAGCTGACCTCCCCACGAATGTTCACCTATGGCTGCACGTGGGAATTTGGAGC
CATGGTGAACTACATCAAGAGGACATATCCCCAGACCCAGCTGGTCGTCGTGGGCTTCAGCCTGGGTGGT
AACATCGTGTGCAAATACTTGGGGGAGACGCAGGCAAACCAGGAAAAGGTCCTGTGCTGTGTCAGTGTGT
GCCAGGGGTACAGCGCACTGAGGGCCCAGGAGACCTTCATGCAGTGGGACCAGTGCCGCAGGTTCTACAA
CTTCCTCATGGCCGACAACATGAAGAAGATCATCCTGTCTCACAGACAAGCTCTCTTTGGAGACCACGTT
AAGAAACCCCAGAGCCTGGAGGACACGGACTTGAGCCGGCTGTACACAGCAACATCCCTGATGCAGATTG
ATGACAATGTGATGAGAAAGTTCCATGGCTATAATTCCCTGAAGGAATACTATGAGGAAGAGAGCTGCAT
GAGGTACCTGCACAGGATATATGTGCCTCTCATGCTGGTTAATGCAGCTGACGACCCCTTGGTGCACGAA
AGCCTTCTAACCATTCCAAAGTCTCTCTCAGAGAAACGGGAGAATGTCATGTTCGTGCTGCCTCTGCATG
GGGGCCACCTGGGCTTCTTCGAGGGCTCCGTGCTGTTCCCCGAGCCGCTGACATGGATGGATAAGCTGGT
AGTGGAGTATGCCAATGCCATTTGCCAATGGGAAAGGAATAAGTCCCAGTGCTCAGACACGGAGCAGATG
GAGGCCGAGTTGGAATGA

Translation (425 aa):
MNAMLETPELPAVFDGVKLAAVAAVLYVIVRCLNLKSPTAPPDLYFQDSGLSRFLLKSCPLLTKEYIPPL
IWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEHCVGDDITMVICPGIANHSEK
QYIRTFVDYAQKNGYRCAVLNHLGALPNIELTSPRMFTYGCTWEFGAMVNYIKRTYPQTQLVVVGFSLGG
NIVCKYLGETQANQEKVLCCVSVCQGYSALRAQETFMQWDQCRRFYNFLMADNMKKIILSHRQALFGDHV
KKPQSLEDTDLSRLYTATSLMQIDDNVMRKFHGYNSLKEYYEEESCMRYLHRIYVPLMLVNAADDPLVHE
SLLTIPKSLSEKRENVMFVLPLHGGHLGFFEGSVLFPEPLTWMDKLVVEYANAICQWERNKSQCSDTEQM
EAELE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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