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Report for CCDS31124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31124.1 Public Homo sapiens 1 OR2T27 24 110 108 CCDS HistoryNCBI Gene:403239Re-query CCDS DB by CCDS ID:31124.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31124.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000460972.4 ENSP00000493412.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000460972.4Link to Ensembl Protein Viewer:ENSP00000493412.1Re-query CCDS DB by Nucleotide ID:ENST00000460972Re-query CCDS DB by Protein ID:ENSP00000493412
Original member Current member EBI ENST00000641652.1 ENSP00000493434.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641652.1Link to Ensembl Protein Viewer:ENSP00000493434.1Re-query CCDS DB by Nucleotide ID:ENST00000641652Re-query CCDS DB by Protein ID:ENSP00000493434
Original member Current member NCBI NM_001001824.2 NP_001001824.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001824.2Link to Protein Sequence:NP_001001824.1Re-query CCDS DB by Nucleotide ID:NM_001001824Re-query CCDS DB by Protein ID:NP_001001824Link to BLAST:NP_001001824.1
Original member Current member NCBI NM_001386060.1 NP_001372989.1 Accepted alive Link to Nucleotide Sequence:NM_001386060.1Link to Protein Sequence:NP_001372989.1Re-query CCDS DB by Nucleotide ID:NM_001386060Re-query CCDS DB by Protein ID:NP_001372989Link to BLAST:NP_001372989.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001824.1 317 Q8NH04 317 100% 0 0
NP_001372989.1 317 Q8NH04 317 100% 0 0

Chromosomal Locations for CCDS 31124.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 248649931 248650884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGGAGCAGAGCAATTATTCCGTGTATGCCGACTTTATCCTTCTGGGTTTGTTCAGCAACGCCCGTTTCC
CCTGGCTTCTCTTTGCCCTCATTCTCCTGGTCTTTTTGACCTCCATAGCCAGCAACGTGGTCAAGATCAT
TCTCATCCACATAGACTCCCGCCTCCACACCCCCATGTACTTCCTGCTCAGCCAGCTCTCCCTCAGGGAC
ATCCTGTATATTTCCACCATTGTGCCCAAAATGCTGGTCGACCAGGTGATGAGCCAGAGAGCCATTTCCT
TTGCTGGATGCACTGCCCAACACTTCCTCTACTTGACCTTAGCAGGGGCTGAGTTCTTCCTCCTAGGACT
CATGTCCTATGATCGCTACGTAGCCATCTGCAACCCTCTGCACTATCCTGTCCTCATGAGCCGCAAGATC
TGCTGGTTGATTGTGGCGGCAGCCTGGCTGGGAGGGTCTATCGATGGTTTCTTGCTCACCCCCGTCACCA
TGCAGTTCCCCTTCTGTGCCTCTCGGGAGATCAACCACTTCTTCTGCGAGGTGCCTGCCCTTCTGAAGCT
CTCCTGCACGGACACATCAGCCTACGAGACAGCCATGTATGTCTGCTGTATTATGATGCTCCTCATCCCT
TTCTCTGTCATCTCGGGCTCTTACACAAGAATTCTCATTACTGTTTATAGGATGAGCGAGGCAGAGGGGA
GGGGAAAGGCTGTGGCCACCTGCTCCTCACACATGGTGGTTGTCAGCCTCTTCTATGGGGCTGCCATGTA
CACATACGTGCTGCCTCATTCTTACCACACCCCTGAGCAGGACAAAGCTGTATCTGCCTTCTACACCATC
CTTACTCCCATGCTCAATCCACTCATTTACAGCCTTAGGAACAAGGATGTCACAGGGGCCCTACAGAAGG
TTGTGGGGAGGTGTGTGTCCTCAGGAAAGGTAACCACTTTCTAA

Translation (317 aa):
MEQSNYSVYADFILLGLFSNARFPWLLFALILLVFLTSIASNVVKIILIHIDSRLHTPMYFLLSQLSLRD
ILYISTIVPKMLVDQVMSQRAISFAGCTAQHFLYLTLAGAEFFLLGLMSYDRYVAICNPLHYPVLMSRKI
CWLIVAAAWLGGSIDGFLLTPVTMQFPFCASREINHFFCEVPALLKLSCTDTSAYETAMYVCCIMMLLIP
FSVISGSYTRILITVYRMSEAEGRGKAVATCSSHMVVVSLFYGAAMYTYVLPHSYHTPEQDKAVSAFYTI
LTPMLNPLIYSLRNKDVTGALQKVVGRCVSSGKVTTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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