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Report for CCDS15236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15236.1 Public Mus musculus 1 Insig2 23 108 98 CCDS HistoryNCBI Gene:72999Re-query CCDS DB by CCDS ID:15236.1Re-query CCDS DB by GeneID:72999See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003818.13 ENSMUSP00000003818.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003818.13Link to Ensembl Protein Viewer:ENSMUSP00000003818.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000003818Re-query CCDS DB by Protein ID:ENSMUSP00000003818
Original member Current member EBI ENSMUST00000071064.12 ENSMUSP00000065485.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071064.12Link to Ensembl Protein Viewer:ENSMUSP00000065485.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071064Re-query CCDS DB by Protein ID:ENSMUSP00000065485
Original member Current member EBI ENSMUST00000160968.7 ENSMUSP00000123747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160968.7Link to Ensembl Protein Viewer:ENSMUSP00000123747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160968Re-query CCDS DB by Protein ID:ENSMUSP00000123747
Original member Current member EBI ENSMUST00000159085.7 ENSMUSP00000124345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159085.7Link to Ensembl Protein Viewer:ENSMUSP00000124345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159085Re-query CCDS DB by Protein ID:ENSMUSP00000124345
Original member Current member NCBI NM_001271531.1 NP_001258460.1 Accepted alive Link to Nucleotide Sequence:NM_001271531.1Link to Protein Sequence:NP_001258460.1Re-query CCDS DB by Nucleotide ID:NM_001271531Re-query CCDS DB by Protein ID:NP_001258460Link to BLAST:NP_001258460.1
Original member Current member NCBI NM_001357251.1 NP_001344180.1 Accepted alive Link to Nucleotide Sequence:NM_001357251.1Link to Protein Sequence:NP_001344180.1Re-query CCDS DB by Nucleotide ID:NM_001357251Re-query CCDS DB by Protein ID:NP_001344180Link to BLAST:NP_001344180.1
Original member Current member NCBI NM_133748.2 NP_598509.1 Accepted alive Link to Nucleotide Sequence:NM_133748.2Link to Protein Sequence:NP_598509.1Re-query CCDS DB by Nucleotide ID:NM_133748Re-query CCDS DB by Protein ID:NP_598509Link to BLAST:NP_598509.1
Original member Current member NCBI NM_178082.3 NP_835183.1 Accepted alive Link to Nucleotide Sequence:NM_178082.3Link to Protein Sequence:NP_835183.1Re-query CCDS DB by Nucleotide ID:NM_178082Re-query CCDS DB by Protein ID:NP_835183Link to BLAST:NP_835183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258460.1 225 Q91WG1 225 100% 0 0
NP_001344180.1 225 Q91WG1 225 100% 0 0
NP_598509.1 225 Q91WG1 225 100% 0 0
NP_835183.1 225 Q91WG1 225 100% 0 0

Chromosomal Locations for CCDS 15236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 121305906 121305947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121306864 121306963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121307140 121307306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121312201 121312325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 121319597 121319840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCGGAAGGAGAGACGGAGTCACCTCGGCCTAAAAAGTGTGGCCCATACATTTCCTCTGTCACCAGCC
AGAGTGTGAACGTGGTGATCCGCGGGGTGGTACTCTTCTTCATTGGAGTGTTCCTGGCATTAGTGTTGAA
CTTGCTTCAGATTCAGAGAAACGTGACACTTTTTCCACCAGATGTGATCACGAGCATCTTTTCATCTGCC
TGGTGGGTACCACCATGCTGCGGCACAGCCTCAGCTGTGATTGGGCTGTTGTACCCCTGCATTGACAGGC
ATCTAGGAGAACCTCATAAATTTAAAAGAGAGTGGTCCAGTGTCATGCGCTGCGTGGCGGTGTTCGTGGG
TATAAATCACGCCAGTGCTAAAGTAGACTTCGACAACAACTTCCAGTTTTCCCTCACACTGGCTGCACTG
TCAGTAGGACTGTGGTGGACTTTTGACAGATCTAGAAGTGGTTTTGGCCTTGGTGTTGGAATTGCTTTCT
TAGCAACCGTTGTCACCCAACTGTTAGTCTACAATGGTGTTTATCAATACACATCTCCAGATTTTCTCTA
TGTCCGTTCTTGGTTGCCATGTATATTTTTTGCTGGAGGCATAACGATGGGAAACATTGGCCGTCAACTG
GCAATGTATGAATGCAAAGTTATTGCTGAAAAATCTCATCAAGAATGA

Translation (225 aa):
MAEGETESPRPKKCGPYISSVTSQSVNVVIRGVVLFFIGVFLALVLNLLQIQRNVTLFPPDVITSIFSSA
WWVPPCCGTASAVIGLLYPCIDRHLGEPHKFKREWSSVMRCVAVFVGINHASAKVDFDNNFQFSLTLAAL
SVGLWWTFDRSRSGFGLGVGIAFLATVVTQLLVYNGVYQYTSPDFLYVRSWLPCIFFAGGITMGNIGRQL
AMYECKVIAEKSHQE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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