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Report for CCDS29573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29573.1 Public Mus musculus 19 Fen1 23 108 98 CCDS HistoryNCBI Gene:14156Re-query CCDS DB by CCDS ID:29573.1Re-query CCDS DB by GeneID:14156See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29573.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025651.5 ENSMUSP00000025651.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025651.5Link to Ensembl Protein Viewer:ENSMUSP00000025651.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000025651Re-query CCDS DB by Protein ID:ENSMUSP00000025651
Original member Current member EBI ENSMUST00000116542.8 ENSMUSP00000112241.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116542.8Link to Ensembl Protein Viewer:ENSMUSP00000112241.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116542Re-query CCDS DB by Protein ID:ENSMUSP00000112241
Original member Current member EBI ENSMUST00000156291.1 ENSMUSP00000117246.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156291.1Link to Ensembl Protein Viewer:ENSMUSP00000117246.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156291Re-query CCDS DB by Protein ID:ENSMUSP00000117246
Original member Current member EBI ENSMUST00000142241.1 ENSMUSP00000119221.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142241.1Link to Ensembl Protein Viewer:ENSMUSP00000119221.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142241Re-query CCDS DB by Protein ID:ENSMUSP00000119221
Original member Current member NCBI NM_001271614.2 NP_001258543.1 Accepted alive Link to Nucleotide Sequence:NM_001271614.2Link to Protein Sequence:NP_001258543.1Re-query CCDS DB by Nucleotide ID:NM_001271614Re-query CCDS DB by Protein ID:NP_001258543Link to BLAST:NP_001258543.1
Original member NCBI NM_001271615.2 NP_001258544.1 Updated not alive Link to Nucleotide Sequence:NM_001271615.2Link to Protein Sequence:NP_001258544.1Re-query CCDS DB by Nucleotide ID:NM_001271615Re-query CCDS DB by Protein ID:NP_001258544
Current member NCBI NM_001271615.3 NP_001258544.1 Accepted alive Link to Nucleotide Sequence:NM_001271615.3Link to Protein Sequence:NP_001258544.1Re-query CCDS DB by Nucleotide ID:NM_001271615Re-query CCDS DB by Protein ID:NP_001258544Link to BLAST:NP_001258544.1
Original member Current member NCBI NM_007999.6 NP_032025.2 Accepted alive Link to Nucleotide Sequence:NM_007999.6Link to Protein Sequence:NP_032025.2Re-query CCDS DB by Nucleotide ID:NM_007999Re-query CCDS DB by Protein ID:NP_032025Link to BLAST:NP_032025.2

Chromosomal Locations for CCDS 29573.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 10199936 10201078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGGGAATTCACGGCCTTGCCAAACTAATTGCTGATGTGGCCCCCAGTGCCATCCGTGAGAATGACATCA
AGAGCTACTTTGGTCGCAAAGTGGCCATCGATGCCTCCATGAGCATCTACCAGTTCCTGATTGCTGTTCG
TCAGGGTGGGGATGTGCTGCAGAACGAGGAGGGTGAGACCACCAGCCACCTGATGGGCATGTTCTACCGT
ACCATCCGCATGATGGAGAATGGCATCAAGCCTGTGTACGTCTTTGATGGCAAACCACCACAGCTGAAGT
CAGGCGAGCTGGCCAAGCGCAGTGAGAGGCGCGCCGAGGCTGAGAAGCAACTGCAGCAGGCTCAGGAGGC
TGGGATGGAGGAGGAGGTGGAGAAGTTCACCAAGAGGCTCGTGAAGGTCACCAAGCAACACAATGATGAG
TGCAAACACCTGCTGAGCCTCATGGGCATCCCTTACCTTGATGCACCCAGCGAGGCAGAGGCCAGCTGTG
CTGCCCTGGCAAAGGCTGGCAAAGTCTATGCTGCGGCCACGGAGGACATGGACTGCCTCACTTTTGGCAG
CCCCGTGCTAATGCGACACTTAACTGCCAGTGAGGCCAAGAAGCTGCCCATCCAAGAGTTCCATCTGAGC
CGCGTCCTGCAGGAGCTGGGTCTGAACCAGGAGCAGTTTGTGGATCTGTGCATCCTGCTGGGTAGCGACT
ACTGCGAGAGCATCCGTGGCATTGGGCCCAAGCGGGCTGTGGATCTCATCCAGAAACATAAGAGCATCGA
GGAGATCGTGAGGCGGCTGGACCCCAGCAAGTACCCCGTTCCAGAGAACTGGCTCCACAAGGAAGCCCAG
CAGCTCTTCCTGGAGCCAGAAGTACTGGACCCAGAGTCTGTGGAGCTGAAGTGGAGCGAGCCAAATGAAG
AAGAGTTGGTCAAATTTATGTGTGGTGAAAAGCAGTTTTCTGAAGAGCGAATTCGCAGTGGGGTCAAGCG
GCTGAGTAAGAGCCGCCAGGGCAGCACCCAGGGACGCCTCGATGATTTCTTCAAGGTGACAGGCTCACTC
TCCTCAGCTAAGCGCAAGGAGCCAGAACCCAAGGGGCCTGCTAAGAAGAAAGCAAAGACTGGGGGAGCGG
GGAAGTTCCGAAGGGGAAAATAA

Translation (380 aa):
MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGETTSHLMGMFYR
TIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAGMEEEVEKFTKRLVKVTKQHNDE
CKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFGSPVLMRHLTASEAKKLPIQEFHLS
RVLQELGLNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDPSKYPVPENWLHKEAQ
QLFLEPEVLDPESVELKWSEPNEEELVKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFKVTGSL
SSAKRKEPEPKGPAKKKAKTGGAGKFRRGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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