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Report for CCDS15215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15215.1 Public Mus musculus 1 Serpinb3d 23 108 98 CCDS HistoryNCBI Gene:394252Re-query CCDS DB by CCDS ID:15215.1Re-query CCDS DB by GeneID:394252See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023861.4 ENSMUSP00000023861.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023861.4Link to Ensembl Protein Viewer:ENSMUSP00000023861.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023861Re-query CCDS DB by Protein ID:ENSMUSP00000023861
Original member Current member NCBI NM_201376.1 NP_958764.1 Accepted alive Link to Nucleotide Sequence:NM_201376.1Link to Protein Sequence:NP_958764.1Re-query CCDS DB by Nucleotide ID:NM_201376Re-query CCDS DB by Protein ID:NP_958764Link to BLAST:NP_958764.1

Chromosomal Locations for CCDS 15215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 107078193 107078597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107079218 107079373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107079652 107079794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107080674 107080791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107081582 107081704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107082738 107082794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107083319 107083480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGATTTGTTTGCTGTAGCCACTACTAAATTCACACTTGAGCTGTACAGGCAGCTCAGAGAATCAGACA
ACAACATCTTCTATTCCCCCATCAGCATGATGAGAACATTAGCAATGCTTCTGCTTGGAGCCAAAGCAAA
CACTGAACAACAAATTAAGAAGGTTCTTCATTTCAATGAAACCACAAAGAAAACAACAGAAAAATCTGCA
GAATCTCATGATGAAGAAAATGTGCATCAACAATTTCAAATGCTTATGACTCAGTTAAACAAATTCAATA
ATGCTTATGACCTAAAGGTTCCCAACAGTATCTATGGAGCAAAGGATTTCCCATTTCTCCAGACATTTTT
GAAAGACATTAGGAAATATTACCAAGCTAACGTGGAATCACTTGATTTTGCACATGCAGCTGAGGAAAGC
CAAAAGAAGATTAATTCCTGGATGGCAAGGCAAACAAATGGAAAAATCAAGGACTTATTTCCTAGTGGGA
GCCTGAACAGTAGCACTATACTGGTTCTGGTGAATGCAGTGTATTTCAAAGGACAATGGAATCACAAATT
TGATGAAAAGCATACCAGAGAAGAAAAGTTTTGGCTGAACAAGAACACAAGTAAACCTGTCCAGATGATG
AAACAAAGAAACAAATTTAACTTCATCTTCCTGGAGAATGTGCAGGCCAAGATTGTGGAAATACCATACA
AAGGCAAAGAGCTAAGTATGTTTGTCCTGCTGCCAGTGGAAATCGATGGACTGAAGAAGTTTGAAGAACA
ACTCACTGCTGACAAGTTACTACAGTGGACAAGAGCAGAGAATATGCATATGACCGAGTTGTATTTATCT
TTGCCTCAGTTCAAAGTGGAAGAGAAGTATGATCTCCGAGTTCCATTGGAACACATGGGGATGGTCGACG
CCTTTGATCCACAGAAGGCTGACTTCTCTGGCATGAGCAATAGTCAAGGTCTCGTGGTGTCTAAAGTTTT
ACACAAGTCCTTTGTGGAGGTAAATGAAGAGGGTGCAGAAGCAGCCACTGCCATGAGTGTGGAATCTCGC
TCATTATCTGTACCAAAGCCCAATGATTTCTCTTGTAATCACCCTTTCCTATTTGTTATGAAGCAAAACA
AGACCAATAGCATCCTCTTCTTTGGCAGAGTGTCTTCCCCTTAA

Translation (387 aa):
MDLFAVATTKFTLELYRQLRESDNNIFYSPISMMRTLAMLLLGAKANTEQQIKKVLHFNETTKKTTEKSA
ESHDEENVHQQFQMLMTQLNKFNNAYDLKVPNSIYGAKDFPFLQTFLKDIRKYYQANVESLDFAHAAEES
QKKINSWMARQTNGKIKDLFPSGSLNSSTILVLVNAVYFKGQWNHKFDEKHTREEKFWLNKNTSKPVQMM
KQRNKFNFIFLENVQAKIVEIPYKGKELSMFVLLPVEIDGLKKFEEQLTADKLLQWTRAENMHMTELYLS
LPQFKVEEKYDLRVPLEHMGMVDAFDPQKADFSGMSNSQGLVVSKVLHKSFVEVNEEGAEAATAMSVESR
SLSVPKPNDFSCNHPFLFVMKQNKTNSILFFGRVSSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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