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Report for CCDS53268.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53268.2 Public Homo sapiens 1 PRAMEF11 24 110 108 CCDS HistoryNCBI Gene:440560Re-query CCDS DB by CCDS ID:53268.2See the combined annotation on chromosome 1 in Sequence Viewer

Public Note for CCDS 53268.1
The coding region has been updated to extend the N-terminus to one that is more supported by paralogous data.

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 53268.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619922.1 ENSP00000480027.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619922.1Link to Ensembl Protein Viewer:ENSP00000480027.2Re-query CCDS DB by Nucleotide ID:ENST00000619922Re-query CCDS DB by Protein ID:ENSP00000480027
Original member Current member NCBI NM_001146344.3 NP_001139816.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146344.3Link to Protein Sequence:NP_001139816.2Re-query CCDS DB by Nucleotide ID:NM_001146344Re-query CCDS DB by Protein ID:NP_001139816Link to BLAST:NP_001139816.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139816.2 478 O60813 478 100% 0 0

Chromosomal Locations for CCDS 53268.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12824942 12825503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12827249 12827830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12828497 12828789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGAAGATGAGCATCCGGATTCCACCCAGACTCCTGGAGCTTGCGGGGCGGAGCCTGCTGAGGGACCAAG
CCTTGGCCGTCTCCACCCTGGAGGAGCTGCCCACGGAACTTTTCCCCCCACTGTTCATGGAGGCCTTCAG
CAGGAGACGCTGTGAGGCCCTGAAGCTGATGGTGCAGGCCTGGCCCTTCCGCCGCCTCCCTCTGAGGCCT
CTGATAAAGATGCCTTGTCTGGAGGCCTTCCAAGCTGTGCTCGATGGGCTGGATGCACTGCTTACCCAAG
GGGTTCGTCCCAGGAGATGGAAACTTCAAGTGCTGGATTTACAGGATGTCTGTGAGAACTTCTGGATGGT
TTGGTCTGAAGCTATGGCCCATGGGTGCTTCCTCAATGCCAAGAGGAACAAAAAACCAGTGCAGGACTGT
CCAAGGATGAGAGGACGGCAGCCCTTGACTGTGTTTGTAGAACTTTGGCTCAAGAACAGGACTCTGGATG
AATACCTCACCTGCCTCCTTCTATGGGTCAAGCAGAGGAGAGATTTACTACACCTGTGCTGTAAGAAGCT
GAAAATTTTGGGAATGCCCTTCCGCAATATCAGAAGCATCCTGAAAATGGTGAACCTAGACTGTATCCAG
GAGGTGGAAGTGAATTGCAAGTGGATACTGCCCATCCTGACACAGTTTACCCCATACCTGGGCCACTTGA
GGAATCTTCAGAAGCTCGTTCTCTCCCACATGGATGTCTCTCGCTACGTTTCCCCAGAGCAGAAGAAGGA
GATTGTTACCCAGTTCACCACTCAGTTCCTCAAGCTGCGCTGCCTCCAAAAGCTTTATATGAACTCTGTT
TCTTTCCTCGAAGGCCACCTGGACCAGCTGCTCAGCTGTCTGAAGACCTCGTTAAAGGTCCTCACAATAA
CTAACTGTGTGCTTTTGGAATCAGACTTGAAGCATCTATCCCAGTGCCCGAGTATCAGTCAACTAAAGAC
CCTGGACCTGAGTGGCATCAGACTGACCAATTACAGTCTTGTGCCTCTCCAAATTCTCCTAGAAAAAGTT
GCAGCCACCCTTGAGTACCTGGATTTAGATGACTGTGGCATCATAGACTCCCAAGTCAACGCCATCCTGC
CTGCCCTGAGCCGCTGCTTTGAGCTCAACACCTTCAGCTTCTGTGGAAATCCCATCTGCATGGCCACCCT
GGAGAACCTGCTGAGCCACACAATCATACTCAAAAACTTATGCCTGGAGCTGTATCCTGCCCCGCAGGAA
AGTTATGGTGCTGATGGTACTCTCTGCTGGAGCAGATTTGCTCAAATTAGGGCTGAGCTGATGAAGAAAG
TGAGGCACTTAAGGCACCCCAAGAGGATCTTGTTCTGTACTGACAACTGCCCTGACCATGGCGACAGGTC
ATTTTATGACCTGGAGGCAGATCAATACTGCTGTTGA

Translation (478 aa):
MKMSIRIPPRLLELAGRSLLRDQALAVSTLEELPTELFPPLFMEAFSRRRCEALKLMVQAWPFRRLPLRP
LIKMPCLEAFQAVLDGLDALLTQGVRPRRWKLQVLDLQDVCENFWMVWSEAMAHGCFLNAKRNKKPVQDC
PRMRGRQPLTVFVELWLKNRTLDEYLTCLLLWVKQRRDLLHLCCKKLKILGMPFRNIRSILKMVNLDCIQ
EVEVNCKWILPILTQFTPYLGHLRNLQKLVLSHMDVSRYVSPEQKKEIVTQFTTQFLKLRCLQKLYMNSV
SFLEGHLDQLLSCLKTSLKVLTITNCVLLESDLKHLSQCPSISQLKTLDLSGIRLTNYSLVPLQILLEKV
AATLEYLDLDDCGIIDSQVNAILPALSRCFELNTFSFCGNPICMATLENLLSHTIILKNLCLELYPAPQE
SYGADGTLCWSRFAQIRAELMKKVRHLRHPKRILFCTDNCPDHGDRSFYDLEADQYCC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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