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Report for CCDS74872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74872.1 Public Homo sapiens 22 SHISA8 24 110 108 CCDS HistoryNCBI Gene:440829Re-query CCDS DB by CCDS ID:74872.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621082.2 ENSP00000481203.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621082.2Link to Ensembl Protein Viewer:ENSP00000481203.1Re-query CCDS DB by Nucleotide ID:ENST00000621082Re-query CCDS DB by Protein ID:ENSP00000481203
Original member Current member NCBI NM_001207020.3 NP_001193949.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001207020.3Link to Protein Sequence:NP_001193949.1Re-query CCDS DB by Nucleotide ID:NM_001207020Re-query CCDS DB by Protein ID:NP_001193949Link to BLAST:NP_001193949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193949.1 397 B8ZZ34-1 397 100% 0 0

Chromosomal Locations for CCDS 74872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 41909765 41910147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41910408 41910554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41911216 41911349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41914138 41914667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1194 nt):
ATGGCGCGGGCCGGGGCGCGGGGACTGCTCGGCGGCCGCCGTCCTCCCGGCCTCCGGCTCGCGCTCGCGC
TTCGGCTCGCGTTGCTGCTGGCGCGGCCGCCGTCGGGCCGCGCGGGAGCCCCCGAGGCGCAGGGTCCCGC
GGCGCCCGGCACGACAGCCCCGGAGGGGGGCGACCGCTGCCGCGGCTACTACGACGTGATGGGCCAGTGG
GACCCGCCCTTCAACTGCAGCTCCGGAGCCTACAGCTTCTGCTGCGGCACGTGCGGCTACCGCTTCTGCT
GCCACGACGGGCCGCGGCGCCTCGACCAGAGCCGCTGTTCCAACTACGACACGCCGGCCTGGGTCCAGAC
AGGCCGGCCGCCCGCCCGCGCCCGCGACACCGCAGCGCCCCGGGACCCCGGCCGCGAGCGCAGCCATACG
GCCGTCTACGCTGTGTGCGGCGTCGCAGCGCTGCTGGTGCTGGCCGGCATCGGGGCGCGCCTGGGACTGG
AGAGGGCGCACAGCCCGCGCGCGCGGCGCACAGTGACCAGGGCGCTGACAGAGCTTCTGAAGCAGCCGGG
CCCCCAGGAGCCACTGCCTCCCACCCTGGGCCCACCCCTGGGTGGCTGTGTCCAGGTGCAGATGGGGGAC
GGCCTCCCCCGGGGCTCCCCCCACAACAGCGCAGACAAGAAGCGCCTCAACAACGCGCCCCGGGGGTCGG
CCGCCCCGGGGCCCCCGCGCGGCCCGCGGCTGCAGGGCGGCGGCAGCCTGACGCTGCAGCCAGACTACGC
CAAGTACGCCACGTTCAAGGCCGCCGCGCTCAAGGCCGCAGAGGCCGCCCCGCGGGACTTCTGTCAGCGT
TTCCCCGCCCTCGAGCCGTCCCCGCGGCAACCCCCGGCGCGGGCTCCGCGACCATCCCCGGACTTGCCTG
CGCCGCTGGACGCCTGCCCCTGGGCCCCGCCGGTCTACGCGCCCCCTGCCGCGCCGGGCCCCTATGCCGC
CTGGACCTCCAGTCGCCCGGCCCGGCCCGCCCCGCTCAGCCACCCGACGGCTCGGGCCTTCCAGGTACCC
CGGCGACCCGGGCACGCGGCCCGGCGCCAGTTCAGTGTGAAGATGCCTGAGACCTTCAACCCGCAGCTCC
CCGGCCTTTACGGCAGCGCGGGCCGCGGGTCCCGGTACCTAAGGACCAATAGCAAGACCGAGGTCACCGT
GTGA

Translation (397 aa):
MARAGARGLLGGRRPPGLRLALALRLALLLARPPSGRAGAPEAQGPAAPGTTAPEGGDRCRGYYDVMGQW
DPPFNCSSGAYSFCCGTCGYRFCCHDGPRRLDQSRCSNYDTPAWVQTGRPPARARDTAAPRDPGRERSHT
AVYAVCGVAALLVLAGIGARLGLERAHSPRARRTVTRALTELLKQPGPQEPLPPTLGPPLGGCVQVQMGD
GLPRGSPHNSADKKRLNNAPRGSAAPGPPRGPRLQGGGSLTLQPDYAKYATFKAAALKAAEAAPRDFCQR
FPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPVYAPPAAPGPYAAWTSSRPARPAPLSHPTARAFQVP
RRPGHAARRQFSVKMPETFNPQLPGLYGSAGRGSRYLRTNSKTEVTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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