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Report for CCDS34364.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34364.1 Public Homo sapiens 6 OR10C1 24 110 108 CCDS HistoryNCBI Gene:442194Re-query CCDS DB by CCDS ID:34364.1See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 34364.1
This olfactory receptor gene is a segregating pseudogene (PMID:22908908), where some individuals have an allele that encodes a functional olfactory receptor, while other individuals have an allele that is predicted to be non-functional. This CCDS is being retained because the Classifier for Olfactory Receptor Pseudogenes (CORP) predicts the reference genome allele to be functional.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Polymorphic pseudogene

Sequence IDs included in CCDS 34364.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444197.3 ENSP00000419119.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444197.3Link to Ensembl Protein Viewer:ENSP00000419119.1Re-query CCDS DB by Nucleotide ID:ENST00000444197Re-query CCDS DB by Protein ID:ENSP00000419119
Original member Current member NCBI NM_013941.4 NP_039229.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013941.4Link to Protein Sequence:NP_039229.3Re-query CCDS DB by Nucleotide ID:NM_013941Re-query CCDS DB by Protein ID:NP_039229Link to BLAST:NP_039229.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_039229.3 312 Q96KK4 312 100% 0 0

Chromosomal Locations for CCDS 34364.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29440016 29440954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGTGCAAACACCTCCATGGTGACTGAGTTTCTTCTTCTCGGCTTCTCCCACCTGGCCGACCTCCAGG
GCTTGCTCTTCTCTGTCTTTCTCACTATCTACCTGCTGACCGTGGCAGGCAATTTCCTCATTGTGGTGCT
GGTCTCCACTGATGCTGCCCTCCAGTCCCCTATGTACTTCTTCCTGCGCACCCTCTCGGCCTTGGAGATT
GGCTATACGTCTGTCACGGTCCCCCTGCTACTTCACCACCTCCTTACTGGCCGGCGCCACATCTCTCGCT
CTGGATGTGCTCTCCAGATGTTCTTCTTCCTCTTCTTTGGCGCCACGGAGTGCTGCCTCCTGGCAGCCAT
GGCCTATGACCGCTATGCAGCCATCTGTGAACCCCTCCGCTACCCACTGCTGCTGAGCCACCGGGTGTGT
CTACAGCTAGCTGGGTCGGCGTGGGCCTGTGGGGTGCTGGTGGGGCTGGGCCACACCCCTTTCATCTTCT
CTTTGCCCTTCTGCGGCCCCAATACCATCCCGCAGTTCTTCTGTGAGATCCAGCCTGTCCTGCAGCTGGT
ATGTGGAGACACCTCGCTTAATGAACTGCAGATTATCCTGGCAACAGCCCTCCTCATCCTCTGCCCCTTT
GGCCTCATCCTGGGCTCCTACGGGCGTATCCTCGTTACCATCTTCCGGATCCCATCTGTTGCGGGCCGCC
GCAAGGCCTTCTCCACCTGCTCCTCCCACCTGATCATGGTCTCCCTCTTCTATGGCACCGCACTCTTTAT
CTATATTCGCCCTAAGGCCAGCTACGATCCGGCCACTGACCCTCTGGTGTCCCTCTTCTATGCTGTGGTC
ACCCCCATCCTCAACCCCATCATCTACAGCCTGCGGAACACAGAGGTCAAAGCTGCCCTAAAGAGAACCA
TCCAGAAAACGGTGCCTATGGAGATTTGA

Translation (312 aa):
MSANTSMVTEFLLLGFSHLADLQGLLFSVFLTIYLLTVAGNFLIVVLVSTDAALQSPMYFFLRTLSALEI
GYTSVTVPLLLHHLLTGRRHISRSGCALQMFFFLFFGATECCLLAAMAYDRYAAICEPLRYPLLLSHRVC
LQLAGSAWACGVLVGLGHTPFIFSLPFCGPNTIPQFFCEIQPVLQLVCGDTSLNELQIILATALLILCPF
GLILGSYGRILVTIFRIPSVAGRRKAFSTCSSHLIMVSLFYGTALFIYIRPKASYDPATDPLVSLFYAVV
TPILNPIIYSLRNTEVKAALKRTIQKTVPMEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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