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Report for CCDS42176.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42176.1 Public Homo sapiens 16 NOL3 24 110 108 CCDS HistoryNCBI Gene:8996Re-query CCDS DB by CCDS ID:42176.1Re-query CCDS DB by GeneID:8996See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 42176.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268605.11 ENSP00000268605.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268605.11Link to Ensembl Protein Viewer:ENSP00000268605.7Re-query CCDS DB by Nucleotide ID:ENST00000268605Re-query CCDS DB by Protein ID:ENSP00000268605
Original member Current member NCBI NM_001276307.3 NP_001263236.1 Accepted alive Link to Nucleotide Sequence:NM_001276307.3Link to Protein Sequence:NP_001263236.1Re-query CCDS DB by Nucleotide ID:NM_001276307Re-query CCDS DB by Protein ID:NP_001263236Link to BLAST:NP_001263236.1
Original member Current member NCBI NM_001276309.3 NP_001263238.1 Accepted alive Link to Nucleotide Sequence:NM_001276309.3Link to Protein Sequence:NP_001263238.1Re-query CCDS DB by Nucleotide ID:NM_001276309Re-query CCDS DB by Protein ID:NP_001263238Link to BLAST:NP_001263238.1
Original member Current member NCBI NM_001276312.3 NP_001263241.1 Accepted alive Link to Nucleotide Sequence:NM_001276312.3Link to Protein Sequence:NP_001263241.1Re-query CCDS DB by Nucleotide ID:NM_001276312Re-query CCDS DB by Protein ID:NP_001263241Link to BLAST:NP_001263241.1
Original member Current member NCBI NM_001394973.1 NP_001381902.1 Accepted alive Link to Nucleotide Sequence:NM_001394973.1Link to Protein Sequence:NP_001381902.1Re-query CCDS DB by Nucleotide ID:NM_001394973Re-query CCDS DB by Protein ID:NP_001381902Link to BLAST:NP_001381902.1
Original member Current member NCBI NM_003946.7 NP_003937.1 Accepted alive Link to Nucleotide Sequence:NM_003946.7Link to Protein Sequence:NP_003937.1Re-query CCDS DB by Nucleotide ID:NM_003946Re-query CCDS DB by Protein ID:NP_003937Link to BLAST:NP_003937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263236.1 208 O60936-2 208 100% 0 0
NP_001263238.1 208 O60936-2 208 100% 0 0
NP_001263241.1 208 O60936-2 208 100% 0 0
NP_001381902.1 208 O60936-2 208 100% 0 0
NP_003937.1 208 O60936-2 208 100% 0 0

Chromosomal Locations for CCDS 42176.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67174170 67174464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67174621 67174944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67175047 67175054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGGCAACGCGCAGGAGCGGCCGTCAGAGACTATCGACCGCGAGCGGAAACGCCTGGTCGAGACGCTGC
AGGCGGACTCGGGACTGCTGTTGGACGCGCTGCTGGCGCGGGGCGTGCTCACCGGGCCAGAGTACGAGGC
ATTGGATGCACTGCCTGATGCCGAGCGCAGGGTGCGCCGCCTACTGCTGCTGGTGCAGGGCAAGGGCGAG
GCCGCCTGCCAGGAGCTGCTACGCTGTGCCCAGCGTACCGCGGGCGCGCCGGACCCCGCTTGGGACTGGC
AGCACGTGGGTCCGGGCTACCGGGACCGCAGCTATGACCCTCCATGCCCAGGCCACTGGACGCCGGAGGC
ACCCGGCTCGGGGACCACATGCCCCGGGTTGCCCAGAGCTTCAGACCCTGACGAGGCCGGGGGCCCTGAG
GGCTCCGAGGCGGTGCAATCCGGGACCCCGGAGGAGCCAGAGCCAGAGCTGGAAGCTGAGGCCTCTAAAG
AGGCTGAACCGGAGCCGGAGCCAGAGCCAGAGCTGGAACCCGAGGCTGAAGCAGAACCAGAGCCGGAACT
GGAGCCAGAACCGGACCCAGAGCCCGAGCCCGACTTCGAGGAAAGGGACGAGTCCGAAGATTCCTGA

Translation (208 aa):
MGNAQERPSETIDRERKRLVETLQADSGLLLDALLARGVLTGPEYEALDALPDAERRVRRLLLLVQGKGE
AACQELLRCAQRTAGAPDPAWDWQHVGPGYRDRSYDPPCPGHWTPEAPGSGTTCPGLPRASDPDEAGGPE
GSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPELEPEPDPEPEPDFEERDESEDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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