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Report for CCDS34517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34517.1 Public Homo sapiens 6 HS3ST5 24 110 108 CCDS HistoryNCBI Gene:222537Re-query CCDS DB by CCDS ID:34517.1Re-query CCDS DB by GeneID:222537See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34517.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000312719.10 ENSP00000427888.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000312719.10Link to Ensembl Protein Viewer:ENSP00000427888.1Re-query CCDS DB by Nucleotide ID:ENST00000312719Re-query CCDS DB by Protein ID:ENSP00000427888
Original member Current member NCBI NM_001387039.1 NP_001373968.1 Accepted alive Link to Nucleotide Sequence:NM_001387039.1Link to Protein Sequence:NP_001373968.1Re-query CCDS DB by Nucleotide ID:NM_001387039Re-query CCDS DB by Protein ID:NP_001373968Link to BLAST:NP_001373968.1
Original member Current member NCBI NM_001387040.1 NP_001373969.1 Accepted alive Link to Nucleotide Sequence:NM_001387040.1Link to Protein Sequence:NP_001373969.1Re-query CCDS DB by Nucleotide ID:NM_001387040Re-query CCDS DB by Protein ID:NP_001373969Link to BLAST:NP_001373969.1
Original member Current member NCBI NM_001387041.1 NP_001373970.1 Accepted alive Link to Nucleotide Sequence:NM_001387041.1Link to Protein Sequence:NP_001373970.1Re-query CCDS DB by Nucleotide ID:NM_001387041Re-query CCDS DB by Protein ID:NP_001373970Link to BLAST:NP_001373970.1
Original member Current member NCBI NM_001387042.1 NP_001373971.1 Accepted alive Link to Nucleotide Sequence:NM_001387042.1Link to Protein Sequence:NP_001373971.1Re-query CCDS DB by Nucleotide ID:NM_001387042Re-query CCDS DB by Protein ID:NP_001373971Link to BLAST:NP_001373971.1
Original member Current member NCBI NM_001387043.1 NP_001373972.1 Accepted alive Link to Nucleotide Sequence:NM_001387043.1Link to Protein Sequence:NP_001373972.1Re-query CCDS DB by Nucleotide ID:NM_001387043Re-query CCDS DB by Protein ID:NP_001373972Link to BLAST:NP_001373972.1
Original member Current member NCBI NM_001387044.1 NP_001373973.1 Accepted alive Link to Nucleotide Sequence:NM_001387044.1Link to Protein Sequence:NP_001373973.1Re-query CCDS DB by Nucleotide ID:NM_001387044Re-query CCDS DB by Protein ID:NP_001373973Link to BLAST:NP_001373973.1
Original member Current member NCBI NM_001387045.1 NP_001373974.1 Accepted alive Link to Nucleotide Sequence:NM_001387045.1Link to Protein Sequence:NP_001373974.1Re-query CCDS DB by Nucleotide ID:NM_001387045Re-query CCDS DB by Protein ID:NP_001373974Link to BLAST:NP_001373974.1
Original member Current member NCBI NM_001387046.1 NP_001373975.1 Accepted alive Link to Nucleotide Sequence:NM_001387046.1Link to Protein Sequence:NP_001373975.1Re-query CCDS DB by Nucleotide ID:NM_001387046Re-query CCDS DB by Protein ID:NP_001373975Link to BLAST:NP_001373975.1
Original member Current member NCBI NM_001387047.1 NP_001373976.1 Accepted alive Link to Nucleotide Sequence:NM_001387047.1Link to Protein Sequence:NP_001373976.1Re-query CCDS DB by Nucleotide ID:NM_001387047Re-query CCDS DB by Protein ID:NP_001373976Link to BLAST:NP_001373976.1
Original member Current member NCBI NM_153612.4 NP_705840.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153612.4Link to Protein Sequence:NP_705840.2Re-query CCDS DB by Nucleotide ID:NM_153612Re-query CCDS DB by Protein ID:NP_705840Link to BLAST:NP_705840.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373968.1 346 Q8IZT8 346 100% 0 0
NP_001373969.1 346 Q8IZT8 346 100% 0 0
NP_001373970.1 346 Q8IZT8 346 100% 0 0
NP_001373971.1 346 Q8IZT8 346 100% 0 0
NP_001373972.1 346 Q8IZT8 346 100% 0 0
NP_001373973.1 346 Q8IZT8 346 100% 0 0
NP_001373974.1 346 Q8IZT8 346 100% 0 0
NP_001373975.1 346 Q8IZT8 346 100% 0 0
NP_001373976.1 346 Q8IZT8 346 100% 0 0
NP_705840.2 346 Q8IZT8 346 100% 0 0

Chromosomal Locations for CCDS 34517.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 114057257 114058190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114062739 114062845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGCTATTCAAACAGCAGGCGTGGCTGAGACAGAAGCTCCTGGTGCTGGGAAGCCTTGCCGTTGGGAGTC
TCCTGTATCTAGTCGCCAGAGTTGGGAGCTTGGATAGGCTACAACCCATTTGCCCCATTGAAGGTCGACT
GGGTGGAGCCCGCACTCAGGCTGAATTCCCACTTCGCGCCCTGCAGTTTAAGCGTGGCCTGCTGCACGAG
TTCCGGAAGGGCAACGCTTCCAAGGAGCAGGTTCGCCTCCATGACCTGGTCCAGCAGCTCCCCAAGGCCA
TTATCATTGGGGTGAGGAAAGGAGGCACAAGGGCCCTGCTTGAAATGCTGAACCTACATCCGGCAGTAGT
CAAAGCCTCTCAAGAAATCCACTTTTTTGATAATGATGAGAATTATGGTAAGGGCATTGAGTGGTATAGG
AAAAAGATGCCTTTTTCCTACCCTCAGCAAATCACAATTGAAAAGAGCCCAGCATATTTTATCACAGAGG
AGGTTCCAGAAAGGATTTACAAAATGAACTCATCCATCAAGTTGTTGATCATTGTCAGGGAGCCAACCAC
AAGAGCTATTTCTGATTATACTCAGGTGCTAGAGGGGAAGGAGAGGAAGAACAAAACTTATTACAAGTTT
GAGAAGCTGGCCATAGACCCTAATACATGCGAAGTGAACACAAAATACAAAGCAGTAAGAACCAGCATCT
ACACCAAACATCTGGAAAGGTGGTTGAAATACTTTCCAATTGAGCAATTTCATGTCGTCGATGGAGATCG
CCTCATCACGGAACCTCTGCCAGAACTTCAGCTCGTGGAGAAGTTCCTAAATCTGCCTCCAAGGATAAGT
CAATACAATTTATACTTCAATGCTACCAGAGGGTTTTACTGCTTGCGGTTTAATATTATCTTTAATAAGT
GCCTGGCGGGCAGCAAGGGGCGCATTCATCCAGAGGTGGACCCCTCTGTCATTACTAAATTGCGCAAATT
CTTTCATCCTTTTAATCAAAAATTTTACCAGATCACTGGGAGGACATTGAACTGGCCCTAA

Translation (346 aa):
MLFKQQAWLRQKLLVLGSLAVGSLLYLVARVGSLDRLQPICPIEGRLGGARTQAEFPLRALQFKRGLLHE
FRKGNASKEQVRLHDLVQQLPKAIIIGVRKGGTRALLEMLNLHPAVVKASQEIHFFDNDENYGKGIEWYR
KKMPFSYPQQITIEKSPAYFITEEVPERIYKMNSSIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYKF
EKLAIDPNTCEVNTKYKAVRTSIYTKHLERWLKYFPIEQFHVVDGDRLITEPLPELQLVEKFLNLPPRIS
QYNLYFNATRGFYCLRFNIIFNKCLAGSKGRIHPEVDPSVITKLRKFFHPFNQKFYQITGRTLNWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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