NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18805.1 Public Mus musculus 4 Hnrnpr 23 108 98 CCDS HistoryNCBI Gene:74326Re-query CCDS DB by CCDS ID:18805.1Re-query CCDS DB by GeneID:74326See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105850.7 ENSMUSP00000101476.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105850.7Link to Ensembl Protein Viewer:ENSMUSP00000101476.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105850Re-query CCDS DB by Protein ID:ENSMUSP00000101476
Original member Current member EBI ENSMUST00000148843.9 ENSMUSP00000138399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148843.9Link to Ensembl Protein Viewer:ENSMUSP00000138399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148843Re-query CCDS DB by Protein ID:ENSMUSP00000138399
Original member Current member NCBI NM_001277121.1 NP_001264050.1 Accepted alive Link to Nucleotide Sequence:NM_001277121.1Link to Protein Sequence:NP_001264050.1Re-query CCDS DB by Nucleotide ID:NM_001277121Re-query CCDS DB by Protein ID:NP_001264050Link to BLAST:NP_001264050.1
Original member Current member NCBI NM_001355182.1 NP_001342111.1 Accepted alive Link to Nucleotide Sequence:NM_001355182.1Link to Protein Sequence:NP_001342111.1Re-query CCDS DB by Nucleotide ID:NM_001355182Re-query CCDS DB by Protein ID:NP_001342111Link to BLAST:NP_001342111.1
Original member Current member NCBI NM_028871.2 NP_083147.1 Accepted alive Link to Nucleotide Sequence:NM_028871.2Link to Protein Sequence:NP_083147.1Re-query CCDS DB by Nucleotide ID:NM_028871Re-query CCDS DB by Protein ID:NP_083147Link to BLAST:NP_083147.1

Chromosomal Locations for CCDS 18805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136314099 136314255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136316361 136316479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136317084 136317191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136319394 136319507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136327236 136327412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136329366 136329501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136332398 136332603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136336298 136336447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136339176 136339297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136339419 136340028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGCTAATCAGGTGAATGGTAATGCGGTACAGTTAAAAGAAGAGGAAGAACCAATGGATACTTCCAGTG
TAACTCACACAGAACACTACAAGACACTGATAGAGGCAGGCCTCCCACAGAAGGTGGCAGAAAGACTTGA
TGAAATATTTCAGACAGGATTGGTAGCTTATGTGGATCTTGATGAAAGAGCAATCGATGCTCTCAGGGAG
TTTAATGAGGAAGGAGCTCTGTCTGTACTGCAGCAGTTCAAAGAAAGTGACCTGTCTCATGTCCAGAACA
AAAGTGCATTTTTATGTGGAGTTATGAAGACCTACAGGCAAAGAGAGAAACAAGGCAGCAAGGTACAAGA
GTCCACGAAAGGGCCCGATGAAGCAAAAATCAAGGCCTTGCTTGAGAGGACTGGTTATACTTTGGATGTG
ACCACGGGACAGAGGAAGTATGGCGGTCCCCCACCAGACAGTGTGTACTCGGGTGTGCAGCCTGGGATTG
GGACAGAGGTCTTCGTAGGTAAAATCCCAAGAGACTTGTATGAGGATGAATTGGTGCCCCTTTTTGAGAA
GGCTGGTCCTATCTGGGATCTACGGCTCATGATGGATCCACTCTCTGGTCAGAACAGAGGCTATGCATTC
ATCACCTTCTGTGGAAAAGAAGCTGCGCAGGAAGCAGTTAAGCTGTGTGACAGCTATGAGATTCGCCCTG
GTAAACACCTGGGAGTGTGCATTTCTGTGGCAAACAACAGACTTTTTGTTGGATCCATTCCAAAGAATAA
AACTAAAGAGAACATTCTGGAAGAGTTCAGTAAAGTCACAGAGGGTTTGGTGGACGTTATTCTCTATCAT
CAACCCGATGACAAAAAGAAGAATCGGGGGTTCTGCTTCCTTGAATATGAGGATCACAAGTCAGCAGCAC
AAGCCAGACGCCGGCTGATGAGTGGAAAAGTCAAAGTGTGGGGAAATGTGGTTACAGTAGAGTGGGCTGA
CCCCGTGGAGGAGCCGGATCCAGAAGTCATGGCAAAGGTAAAAGTTTTATTTGTGAGAAACTTGGCAACT
ACGGTGACAGAAGAAATATTAGAGAAGTCATTTTCTGAGTTTGGAAAACTGGAGCGAGTGAAGAAGTTGA
AGGATTATGCGTTCGTTCATTTTGAGGACAGGGGAGCTGCTGTTAAGGCTATGGATGAAATGAATGGAAA
AGAAATAGAAGGGGAAGAAATTGAAATTGTCTTAGCTAAGCCACCAGACAAGAAAAGGAAAGAGCGCCAA
GCTGCTAGACAGGCCTCCAGAAGCACTGCGTATGAAGATTATTATTATCACCCTCCTCCCCGAATGCCAC
CTCCAATGAGAGGCCGAGGTCGTGGAGGGAGAGGTGGATATGGCTACCCTCCAGATTATTATGGCTATGA
AGACTACTATGATGATTACTATGGTTATGATTATCACGACTATCGTGGAGGCTATGAAGATCCCTACTAC
GGCTATGATGATGGCTATGCAGTAAGAGGAAGAGGAGGAGGAAGGGGGGGGCGAGGTGCTCCACCACCAC
CAAGGGGGCGGGGAGCACCACCTCCAAGAGGTAGAGCTGGCTATTCACAGAGGGGGGCACCTTTGGGACC
ACCAAGAGGCTCAAGGGGTGGCAGAGGGGGTCCTGCACAACAGCAGAGAGGCCGTGGTTCTCGTGGAGCT
CGGGGCAATCGAGGGGGCAATGTAGGAGGCAAGAGAAAGGCAGATGGGTACAACCAACCTGATTCCAAAC
GTCGTCAGACCAACAACCAACAGAACTGGGGTTCCCAACCCATCGCTCAGCAGCCGCTTCAGCAAGGTGG
TGACTATTCTGGTAACTATGGTTACAATAATGACAACCAAGAATTTTATCAGGATACTTATGGGCAACAG
TGGAAATAG

Translation (632 aa):
MANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDERAIDALRE
FNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDV
TTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF
ITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH
QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLAT
TVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ
AARQASRSTAYEDYYYHPPPRMPPPMRGRGRGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYY
GYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGA
RGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQ
WK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH