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Report for CCDS10301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10301.1 Public Homo sapiens 15 CRABP1 24 110 108 CCDS HistoryNCBI Gene:1381Re-query CCDS DB by CCDS ID:10301.1Re-query CCDS DB by GeneID:1381See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299529.7 ENSP00000299529.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000299529.7Link to Ensembl Protein Viewer:ENSP00000299529.6Re-query CCDS DB by Nucleotide ID:ENST00000299529Re-query CCDS DB by Protein ID:ENSP00000299529
Original member Current member NCBI NM_004378.3 NP_004369.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004378.3Link to Protein Sequence:NP_004369.1Re-query CCDS DB by Nucleotide ID:NM_004378Re-query CCDS DB by Protein ID:NP_004369Link to BLAST:NP_004369.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004369.1 137 P29762 137 100% 0 0

Chromosomal Locations for CCDS 10301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78340429 78340498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78341043 78341221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78343499 78343612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78347927 78347977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGCCCAACTTCGCCGGCACCTGGAAGATGCGCAGCAGCGAGAATTTCGACGAGCTGCTCAAGGCACTGG
GTGTGAACGCCATGCTGAGGAAAGTGGCCGTAGCGGCTGCGTCCAAGCCGCACGTGGAGATCCGCCAGGA
CGGGGATCAGTTCTACATCAAGACATCCACCACGGTGCGCACCACTGAGATCAACTTCAAGGTCGGAGAA
GGCTTTGAGGAGGAGACCGTGGACGGACGCAAGTGCAGGAGTTTAGCCACTTGGGAGAATGAGAACAAGA
TCCACTGCACGCAAACTCTTCTTGAAGGGGACGGCCCCAAAACCTACTGGACCCGTGAGCTGGCCAACGA
TGAACTTATCCTGACGTTTGGCGCCGATGACGTGGTCTGCACCAGAATTTATGTCCGAGAGTGA

Translation (137 aa):
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVRTTEINFKVGE
GFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELILTFGADDVVCTRIYVRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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