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Report for CCDS2447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2447.1 Public Homo sapiens 2 EPHA4 24 110 108 CCDS HistoryNCBI Gene:2043Re-query CCDS DB by CCDS ID:2447.1Re-query CCDS DB by GeneID:2043See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 2447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281821.7 ENSP00000281821.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281821.7Link to Ensembl Protein Viewer:ENSP00000281821.2Re-query CCDS DB by Nucleotide ID:ENST00000281821Re-query CCDS DB by Protein ID:ENSP00000281821
Original member Current member EBI ENST00000409938.5 ENSP00000386829.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409938.5Link to Ensembl Protein Viewer:ENSP00000386829.1Re-query CCDS DB by Nucleotide ID:ENST00000409938Re-query CCDS DB by Protein ID:ENSP00000386829
Original member Current member NCBI NM_001304536.2 NP_001291465.1 Accepted alive Link to Nucleotide Sequence:NM_001304536.2Link to Protein Sequence:NP_001291465.1Re-query CCDS DB by Nucleotide ID:NM_001304536Re-query CCDS DB by Protein ID:NP_001291465Link to BLAST:NP_001291465.1
Original member Current member NCBI NM_004438.5 NP_004429.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004438.5Link to Protein Sequence:NP_004429.1Re-query CCDS DB by Nucleotide ID:NM_004438Re-query CCDS DB by Protein ID:NP_004429Link to BLAST:NP_004429.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291465.1 986 P54764-1 986 100% 0 0
NP_004429.1 986 P54764-1 986 100% 0 0

Chromosomal Locations for CCDS 2447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 221426028 221426142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221426464 221426619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221429958 221430151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221434142 221434291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221436399 221436608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221437061 221437122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221442829 221443014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221443493 221443606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221446123 221446181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221455547 221455658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221456613 221456772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221457866 221457990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221482352 221482690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221501017 221501172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221563731 221564394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221568718 221568785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 221572158 221572248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2961 nt):
ATGGCTGGGATTTTCTATTTCGCCCTATTTTCGTGTCTCTTCGGGATTTGCGACGCTGTCACAGGTTCCA
GGGTATACCCCGCGAATGAAGTTACCTTATTGGATTCCAGATCTGTTCAGGGAGAACTTGGGTGGATAGC
AAGCCCTCTGGAAGGAGGGTGGGAGGAAGTGAGTATCATGGATGAAAAAAATACACCAATCCGAACCTAC
CAAGTGTGCAATGTGATGGAACCCAGCCAGAATAACTGGCTACGAACTGATTGGATCACCCGAGAAGGGG
CTCAGAGGGTGTATATTGAGATTAAATTCACCTTGAGGGACTGCAATAGTCTTCCGGGCGTCATGGGGAC
TTGCAAGGAGACGTTTAACCTGTACTACTATGAATCAGACAACGACAAAGAGCGTTTCATCAGAGAGAAC
CAGTTTGTCAAAATTGACACCATTGCTGCTGATGAGAGCTTCACCCAAGTGGACATTGGTGACAGAATCA
TGAAGCTGAACACCGAGATCCGGGATGTAGGGCCATTAAGCAAAAAGGGGTTTTACCTGGCTTTTCAGGA
TGTGGGGGCCTGCATCGCCCTGGTATCAGTCCGTGTGTTCTATAAAAAGTGTCCACTCACAGTCCGCAAT
CTGGCCCAGTTTCCTGACACCATCACAGGGGCTGATACGTCTTCCCTGGTGGAAGTTCGAGGCTCCTGTG
TCAACAACTCAGAAGAGAAAGATGTGCCAAAAATGTACTGTGGGGCAGATGGTGAATGGCTGGTACCCAT
TGGCAACTGCCTATGCAACGCTGGGCATGAGGAGCGGAGCGGAGAATGCCAAGCTTGCAAAATTGGATAT
TACAAGGCTCTCTCCACGGATGCCACCTGTGCCAAGTGCCCACCCCACAGCTACTCTGTCTGGGAAGGAG
CCACCTCGTGCACCTGTGACCGAGGCTTTTTCAGAGCTGACAACGATGCTGCCTCTATGCCCTGCACCCG
TCCACCATCTGCTCCCCTGAACTTGATTTCAAATGTCAACGAGACATCTGTGAACTTGGAATGGAGTAGC
CCTCAGAATACAGGTGGCCGCCAGGACATTTCCTATAATGTGGTATGCAAGAAATGTGGAGCTGGTGACC
CCAGCAAGTGCCGACCCTGTGGAAGTGGGGTCCACTACACCCCACAGCAGAATGGCTTGAAGACCACCAA
AGTCTCCATCACTGACCTCCTAGCTCATACCAATTACACCTTTGAAATCTGGGCTGTGAATGGAGTGTCC
AAATATAACCCTAACCCAGACCAATCAGTTTCTGTCACTGTGACCACCAACCAAGCAGCACCATCATCCA
TTGCTTTGGTCCAGGCTAAAGAAGTCACAAGATACAGTGTGGCACTGGCTTGGCTGGAACCAGATCGGCC
CAATGGGGTAATCCTGGAATATGAAGTCAAGTATTATGAGAAGGATCAGAATGAGCGAAGCTATCGTATA
GTTCGGACAGCTGCCAGGAACACAGATATCAAAGGCCTGAACCCTCTCACTTCCTATGTTTTCCACGTGC
GAGCCAGGACAGCAGCTGGCTATGGAGACTTCAGTGAGCCCTTGGAGGTTACAACCAACACAGTGCCTTC
CCGGATCATTGGAGATGGGGCTAACTCCACAGTCCTTCTGGTCTCTGTCTCGGGCAGTGTGGTGCTGGTG
GTAATTCTCATTGCAGCTTTTGTCATCAGCCGGAGACGGAGTAAATACAGTAAAGCCAAACAAGAAGCGG
ATGAAGAGAAACATTTGAATCAAGGTGTAAGAACATATGTGGACCCCTTTACGTACGAAGATCCCAACCA
AGCAGTGCGAGAGTTTGCCAAAGAAATTGACGCATCCTGCATTAAGATTGAAAAAGTTATAGGAGTTGGT
GAATTTGGTGAGGTATGCAGTGGGCGTCTCAAAGTGCCTGGCAAGAGAGAGATCTGTGTGGCTATCAAGA
CTCTGAAAGCTGGTTATACAGACAAACAGAGGAGAGACTTCCTGAGTGAGGCCAGCATCATGGGACAGTT
TGACCATCCGAACATCATTCACTTGGAAGGCGTGGTCACTAAATGTAAACCAGTAATGATCATAACAGAG
TACATGGAGAATGGCTCCTTGGATGCATTCCTCAGGAAAAATGATGGCAGATTTACAGTCATTCAGCTGG
TGGGCATGCTTCGTGGCATTGGGTCTGGGATGAAGTATTTATCTGATATGAGCTATGTGCATCGTGATCT
GGCCGCACGGAACATCCTGGTGAACAGCAACTTGGTCTGCAAAGTGTCTGATTTTGGCATGTCCCGAGTG
CTTGAGGATGATCCGGAAGCAGCTTACACCACCAGGGGTGGCAAGATTCCTATCCGGTGGACTGCGCCAG
AAGCAATTGCCTATCGTAAATTCACATCAGCAAGTGATGTATGGAGCTATGGAATCGTTATGTGGGAAGT
GATGTCGTACGGGGAGAGGCCCTATTGGGATATGTCCAATCAAGATGTGATTAAAGCCATTGAGGAAGGC
TATCGGTTACCCCCTCCAATGGACTGCCCCATTGCGCTCCACCAGCTGATGCTAGACTGCTGGCAGAAGG
AGAGGAGCGACAGGCCTAAATTTGGGCAGATTGTCAACATGTTGGACAAACTCATCCGCAACCCCAACAG
CTTGAAGAGGACAGGGACGGAGAGCTCCAGACCTAACACTGCCTTGTTGGATCCAAGCTCCCCTGAATTC
TCTGCTGTGGTATCAGTGGGCGATTGGCTCCAGGCCATTAAAATGGACCGGTATAAGGATAACTTCACAG
CTGCTGGTTATACCACACTAGAGGCTGTGGTGCACGTGAACCAGGAGGACCTGGCAAGAATTGGTATCAC
AGCCATCACGCACCAGAATAAGATTTTGAGCAGTGTCCAGGCAATGCGAACCCAAATGCAGCAGATGCAC
GGCAGAATGGTTCCCGTCTGA

Translation (986 aa):
MAGIFYFALFSCLFGICDAVTGSRVYPANEVTLLDSRSVQGELGWIASPLEGGWEEVSIMDEKNTPIRTY
QVCNVMEPSQNNWLRTDWITREGAQRVYIEIKFTLRDCNSLPGVMGTCKETFNLYYYESDNDKERFIREN
QFVKIDTIAADESFTQVDIGDRIMKLNTEIRDVGPLSKKGFYLAFQDVGACIALVSVRVFYKKCPLTVRN
LAQFPDTITGADTSSLVEVRGSCVNNSEEKDVPKMYCGADGEWLVPIGNCLCNAGHEERSGECQACKIGY
YKALSTDATCAKCPPHSYSVWEGATSCTCDRGFFRADNDAASMPCTRPPSAPLNLISNVNETSVNLEWSS
PQNTGGRQDISYNVVCKKCGAGDPSKCRPCGSGVHYTPQQNGLKTTKVSITDLLAHTNYTFEIWAVNGVS
KYNPNPDQSVSVTVTTNQAAPSSIALVQAKEVTRYSVALAWLEPDRPNGVILEYEVKYYEKDQNERSYRI
VRTAARNTDIKGLNPLTSYVFHVRARTAAGYGDFSEPLEVTTNTVPSRIIGDGANSTVLLVSVSGSVVLV
VILIAAFVISRRRSKYSKAKQEADEEKHLNQGVRTYVDPFTYEDPNQAVREFAKEIDASCIKIEKVIGVG
EFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVVTKCKPVMIITE
YMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAARNILVNSNLVCKVSDFGMSRV
LEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEG
YRLPPPMDCPIALHQLMLDCWQKERSDRPKFGQIVNMLDKLIRNPNSLKRTGTESSRPNTALLDPSSPEF
SAVVSVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHVNQEDLARIGITAITHQNKILSSVQAMRTQMQQMH
GRMVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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